View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3822_low_5 (Length: 437)
Name: NF3822_low_5
Description: NF3822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3822_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 430
Target Start/End: Original strand, 36250520 - 36250932
Alignment:
| Q |
19 |
gaatgatcacatttatgagtaaagtcagaataaggtggataagagcagnnnnnnnnn-ctgctatttacaaagtgtatgaacatgtttatgataggacac |
117 |
Q |
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| T |
36250520 |
gaatgatcacatttatgagtcaagtcagaataaggtggataagagcagaaaaaaaaaactgctatttacaaagtgtatgaacatgtttatgataggacac |
36250619 |
T |
|
| Q |
118 |
tgaaatatatgaataaatgaatatttaggcgatgtttactttctaaaaacattttaaattgccaacagggatatgaaagaatcatatagtgaacaattgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36250620 |
tgaaatatatgaataaatgaatatttaggcgatgtttactttctaaaaacattttaaattgccaacagggatatgaaagaatcatatagtgaacaattgt |
36250719 |
T |
|
| Q |
218 |
tattataatgatgcctcagtatcaggcacaacgaccgattttgcttctataaatagctggagcaatatgatatattgattcataaatgataattcctatt |
317 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36250720 |
tattataatgatgcctcagtatcaagcacaacgaccaattttgcttctataaatagctggagcaatatgatatattgattcataaatgataattcctatt |
36250819 |
T |
|
| Q |
318 |
acctgaaatctacttctttgtattttctcttgtacgagctgtagaggatagagaccaaaagttcataacaaaagctgttgaagaagcatataaaggtgtt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36250820 |
acctgaaatctacttctttgtattttctcttgtacgagctgtagaggatagagaccaaaagttcataacaaaagctgttgaagaagcatataaaggtgtt |
36250919 |
T |
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| Q |
418 |
gaatgtgatgatg |
430 |
Q |
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| T |
36250920 |
gaatgtggtgatg |
36250932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 364 - 424
Target Start/End: Original strand, 36231840 - 36231900
Alignment:
| Q |
364 |
gatagagaccaaaagttcataacaaaagctgttgaagaagcatataaaggtgttgaatgtg |
424 |
Q |
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| T |
36231840 |
gatagagaccgaaagttcatagcaaaagctgttgaagaagcatacaaaggtgttgaatgtg |
36231900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 430
Target Start/End: Original strand, 36234432 - 36234505
Alignment:
| Q |
357 |
tgtagaggatagagaccaaaagttcataacaaaagctgttgaagaagcatataaaggtgttgaatgtgatgatg |
430 |
Q |
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| T |
36234432 |
tgtagaagatagagacagcaagttcataataaaatctgttaaagaagcatatgaagctgttgaatctggtgatg |
36234505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 362 - 430
Target Start/End: Original strand, 19895192 - 19895260
Alignment:
| Q |
362 |
aggatagagaccaaaagttcataacaaaagctgttgaagaagcatataaaggtgttgaatgtgatgatg |
430 |
Q |
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| T |
19895192 |
aggatagagaccataaatttttaagaaaagcagttgaagaagcctataaaggtgtagaatgtgaagatg |
19895260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 390
Target Start/End: Complemental strand, 367368 - 367333
Alignment:
| Q |
355 |
gctgtagaggatagagaccaaaagttcataacaaaa |
390 |
Q |
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| T |
367368 |
gctgtagaggataaagaccaaaagttcataacaaaa |
367333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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