View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3822_low_6 (Length: 405)
Name: NF3822_low_6
Description: NF3822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3822_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 5764543 - 5764930
Alignment:
| Q |
1 |
atgtcgtctcgtgggcaagacgcttattcagaagcaggaaatgttgttgatcaaacagtaggggccatcagaacagtaagacacagacatcaaatgatta |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5764543 |
atgtcgtctcgtgggcaagccgcttattcagaagcaggaaatgttgttgatcaaacagtaggggccatcagaacagtaagacacagacatcaaatgatta |
5764642 |
T |
|
| Q |
101 |
tttactttgcatttgtctttaagttttaatcactgtcactgacttcggnnnnnnnnnncttctgaaaattgacaaggttgcatcttttaccggggagaaa |
200 |
Q |
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|||| ||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5764643 |
tttaatttgcatttgtatttaagttttaatcactgtccctgacttcggtttttttt---ttctgaaaattgacaaggttgcatcttttaccggggagaaa |
5764739 |
T |
|
| Q |
201 |
aaagcaattgaaaattacaatagtaagttaaaagttgcttatactacaacagttcaacaaggaattgcctcggggttaggaatggggacactgtctttga |
300 |
Q |
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| T |
5764740 |
aaagcaattgaaaattacaatagtaagttaaaagttgcttatactacaacagttcaacaaggaattgcctcggggttaggaatggggacactgtctttga |
5764839 |
T |
|
| Q |
301 |
ttgtctttagcacttatggactggccatgtggtatggttccaagttagtccttgagaaaggatatactggtggaattgtcatggttgttat |
391 |
Q |
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| T |
5764840 |
ttgtctttagcacttatggactggccatgtggtatggttccaagttagtcctggagaaaggatatactggtggaattgtcatggttgttat |
5764930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 175 - 375
Target Start/End: Complemental strand, 5833103 - 5832903
Alignment:
| Q |
175 |
aggttgcatcttttaccggggagaaaaaagcaattgaaaattacaatagtaagttaaaagttgcttatactacaacagttcaacaaggaattgcctcggg |
274 |
Q |
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| T |
5833103 |
aggttgcatcttttactggtgagaaaaaagccatagagaagtataatagcaagataaaaattgcttatactacaatggttaaacaaggcatagtctcagg |
5833004 |
T |
|
| Q |
275 |
gttaggaatggggacactgtctttgattgtctttagcacttatggactggccatgtggtatggttccaagttagtccttgagaaaggatatactggtgga |
374 |
Q |
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||| ||||| || | || | || |||| ||| ||||||||||||| |||||||||||||||||||| ||||| | ||||||||||||| ||| ||| |
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| T |
5833003 |
gtttggaatcggaatgcttacctttattgccttctgcacttatggacttgccatgtggtatggttccaaactagtcatcgagaaaggatataatggcgga |
5832904 |
T |
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| Q |
375 |
a |
375 |
Q |
| |
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| |
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| T |
5832903 |
a |
5832903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 5833248 - 5833186
Alignment:
| Q |
22 |
gcttattcagaagcaggaaatgttgttgatcaaacagtaggggccatcagaacagtaagacac |
84 |
Q |
| |
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| T |
5833248 |
gcttatgcagaagcgggaaacgttgttgatcaaacagttggagccatcagaacagtaagacac |
5833186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 380
Target Start/End: Original strand, 5821988 - 5822193
Alignment:
| Q |
175 |
aggttgcatcttttaccggggagaaaaaagcaattgaaaattacaatagtaagttaaaagttgcttatactacaacagttcaacaaggaattgcctcggg |
274 |
Q |
| |
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||||||| |||||||| || ||| ||||||||| |||||| ||||||| |||||||| | ||||||||| | |||||||||||||| | ||||| || |
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| T |
5821988 |
aggttgcctcttttactggtgaggaaaaagcaactgaaaagtacaataataagttaagaattgcttataaaagtacagttcaacaagggttggcctcagg |
5822087 |
T |
|
| Q |
275 |
gttaggaatggggacactgtctttgattgtctttagcacttatggactggccatgtggtatggttccaagttagtccttgagaaaggatatactggtgga |
374 |
Q |
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| T |
5822088 |
gacaggaatgggattacttttgcttattatctttggcacatatgcacttgctatgtggtatggttccaaactcatcattgagaaaggatatgatggtgga |
5822187 |
T |
|
| Q |
375 |
attgtc |
380 |
Q |
| |
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| |||| |
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| T |
5822188 |
agtgtc |
5822193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 175 - 375
Target Start/End: Complemental strand, 29330615 - 29330415
Alignment:
| Q |
175 |
aggttgcatcttttaccggggagaaaaaagcaattgaaaattacaatagtaagttaaaagttgcttatactacaacagttcaacaaggaattgcctcggg |
274 |
Q |
| |
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|||||||||||||||| || ||||||||||| || || || || ||||| ||| ||||| ||||||||||| ||| ||||||||| | || || || || |
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| T |
29330615 |
aggttgcatcttttactggtgagaaaaaagccatagagaagtataatagcaagataaaaattgcttatactgcaatggttcaacaaagcatagcatcagg |
29330516 |
T |
|
| Q |
275 |
gttaggaatggggacactgtct-ttgattgtctttagcacttatggactggccatgtggtatggttccaagttagtccttgagaaaggatatactggtgg |
373 |
Q |
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| T |
29330515 |
gataggaatgggaacgct-tctccttattatcttctgctcttacggacttgccatgtggtatggttccaagctagtgattgcgaaaggatataatggcgg |
29330417 |
T |
|
| Q |
374 |
aa |
375 |
Q |
| |
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|| |
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| T |
29330416 |
aa |
29330415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 29330750 - 29330691
Alignment:
| Q |
22 |
gcttattcagaagcaggaaatgttgttgatcaaacagtaggggccatcagaacagtaaga |
81 |
Q |
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|||||| |||||||||||||||||| | |||||||||| || |||| |||||||||||| |
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| T |
29330750 |
gcttatgcagaagcaggaaatgttgctaatcaaacagttggatccatgagaacagtaaga |
29330691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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