View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3822_low_7 (Length: 374)

Name: NF3822_low_7
Description: NF3822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3822_low_7
NF3822_low_7
[»] chr4 (5 HSPs)
chr4 (1-99)||(51985516-51985614)
chr4 (322-362)||(20004775-20004815)
chr4 (324-362)||(48171824-48171862)
chr4 (326-362)||(31444957-31444993)
chr4 (322-362)||(47683478-47683518)
[»] chr8 (2 HSPs)
chr8 (320-365)||(4438564-4438609)
chr8 (320-362)||(4437487-4437529)
[»] chr1 (2 HSPs)
chr1 (320-365)||(31239093-31239138)
chr1 (322-362)||(49840478-49840518)
[»] chr6 (2 HSPs)
chr6 (322-362)||(8866864-8866904)
chr6 (322-362)||(32279611-32279651)
[»] chr5 (1 HSPs)
chr5 (322-362)||(31329410-31329450)


Alignment Details
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 51985516 - 51985614
Alignment:
Q  1 ccccttttataggtcgcatgctttggaggtcacttgattatctacagctccctattaaggttagaaaaagcacaaattattatgggaggttggatgtag 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  51985516 ccccttttataggtcgcatgctttggaggtcacttgattatctacagctccctattaaggttagaaaaagcacaaattattatggaaggttggatgtag 51985614  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 362
Target Start/End: Complemental strand, 20004815 - 20004775
Alignment:
Q  322 tcattaaaaaatataagaattcatgttatatttgttatatt 362  Q
    ||||||||||||||||||||| || ||||||||||||||||    
T  20004815 tcattaaaaaatataagaatttatattatatttgttatatt 20004775  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 362
Target Start/End: Original strand, 48171824 - 48171862
Alignment:
Q  324 attaaaaaatataagaattcatgttatatttgttatatt 362  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  48171824 attaaaaaatataagaatttttgttatatttgttatatt 48171862  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 362
Target Start/End: Complemental strand, 31444993 - 31444957
Alignment:
Q  326 taaaaaatataagaattcatgttatatttgttatatt 362  Q
    ||||||||||||||||| || ||||||||||||||||    
T  31444993 taaaaaatataagaatttatattatatttgttatatt 31444957  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 362
Target Start/End: Original strand, 47683478 - 47683518
Alignment:
Q  322 tcattaaaaaatataagaattcatgttatatttgttatatt 362  Q
    ||||| ||||||||||||||| || ||||||||||||||||    
T  47683478 tcattcaaaaatataagaatttatattatatttgttatatt 47683518  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 320 - 365
Target Start/End: Original strand, 4438564 - 4438609
Alignment:
Q  320 tatcattaaaaaatataagaattcatgttatatttgttatattctt 365  Q
    ||||||||||||| ||||||||| || |||||||||||||||||||    
T  4438564 tatcattaaaaaagataagaatttatattatatttgttatattctt 4438609  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 362
Target Start/End: Complemental strand, 4437529 - 4437487
Alignment:
Q  320 tatcattaaaaaatataagaattcatgttatatttgttatatt 362  Q
    ||||||||||||||||||||||| || ||||||||| ||||||    
T  4437529 tatcattaaaaaatataagaatttatattatatttgctatatt 4437487  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 365
Target Start/End: Original strand, 31239093 - 31239138
Alignment:
Q  320 tatcattaaaaaatataagaattcatgttatatttgttatattctt 365  Q
    ||||||| ||||| ||||||||| || |||||||||||||||||||    
T  31239093 tatcatttaaaaagataagaatttatattatatttgttatattctt 31239138  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 362
Target Start/End: Complemental strand, 49840518 - 49840478
Alignment:
Q  322 tcattaaaaaatataagaattcatgttatatttgttatatt 362  Q
    ||||||||||||||||||||  || ||||||||||||||||    
T  49840518 tcattaaaaaatataagaatgtatattatatttgttatatt 49840478  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 362
Target Start/End: Complemental strand, 8866904 - 8866864
Alignment:
Q  322 tcattaaaaaatataagaattcatgttatatttgttatatt 362  Q
    ||||||||||| ||||||||| || ||||||||||||||||    
T  8866904 tcattaaaaaagataagaatttatattatatttgttatatt 8866864  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 362
Target Start/End: Complemental strand, 32279651 - 32279611
Alignment:
Q  322 tcattaaaaaatataagaattcatgttatatttgttatatt 362  Q
    ||||||||||| ||||||||| || ||||||||||||||||    
T  32279651 tcattaaaaaagataagaatttatattatatttgttatatt 32279611  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 362
Target Start/End: Original strand, 31329410 - 31329450
Alignment:
Q  322 tcattaaaaaatataagaattcatgttatatttgttatatt 362  Q
    |||||||||||||||| ||||||| ||||||| ||||||||    
T  31329410 tcattaaaaaatataaaaattcatattatattcgttatatt 31329450  T

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