View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3822_low_8 (Length: 359)
Name: NF3822_low_8
Description: NF3822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3822_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 40446330 - 40445990
Alignment:
| Q |
1 |
tacagtccaactgacaggtaggatgtgggctagacttcttgaatcgacaaatcaaccaagttttgtttcctctgaccaacaaagagttgagaaggagatg |
100 |
Q |
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| T |
40446330 |
tacagtccaactgacaggtaggatgtgggctagacttcttgaatcgacaaatcaaccaagttttgtttcctctgaccaacaaagagttgagaaggagatg |
40446231 |
T |
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| Q |
101 |
gtcgaagatacaaataagatgaatattacctctatataatctaggttcaatagtgtgtattaagtattaactgttgctgcacatcgattagccttttgtg |
200 |
Q |
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| T |
40446230 |
gtcgaagatacaaataagatgaatattacttctatataatctaggttcaatagtgtgtattaagtattaactgttgctgcacatcgattagccttttgtg |
40446131 |
T |
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| Q |
201 |
ttatcctgttcttttttatatttctgttgggaaagttagaatatggtagatttatgtacgagcataatttgggtactactatgcccgtaaaacatcagan |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
40446130 |
ttatcctgttcttttttatatttctgttgggaaagttagaatatggtagatttatgtacgagcataatttgggtactactatgcctgtaaaccatcagat |
40446031 |
T |
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| Q |
301 |
nnnnnngttgctcaatttattaatacatacagaggttttta |
341 |
Q |
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| T |
40446030 |
ttttttgttgctcaatttattaatacatacagaggttttta |
40445990 |
T |
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