View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3822_low_9 (Length: 333)
Name: NF3822_low_9
Description: NF3822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3822_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 5e-90; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 134 - 317
Target Start/End: Complemental strand, 3558742 - 3558559
Alignment:
| Q |
134 |
caagtcaatatgcatttcttttattgattttaatggatgtttataaaagacatattttgatggatgaacaaaattgattgaacttattaaatttaaagac |
233 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
3558742 |
caagtcaatatgcatgtcttttattgattttaatggatgtttataaaagacatattttgatggatgaacaaaattgattgaacttattaaattcaaaaac |
3558643 |
T |
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| Q |
234 |
taatttgttatttcgtaagtttgaggactaagttgctctactaaacaatttcaagaacaaaaatgagatcaactagataatttt |
317 |
Q |
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| T |
3558642 |
taatttgttatttcgtaagtttgaggactaagttgctctactaaacaatttcaaaaacaaaaatgagatcaactagataatttt |
3558559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 152 - 317
Target Start/End: Complemental strand, 3544875 - 3544706
Alignment:
| Q |
152 |
ttttattgattttaatggatgtttataaaagacatattttgatggatgaacaaa----attgattgaacttattaaatttaaagactaatttgttatttc |
247 |
Q |
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|||||||| |||| || |||||||| |||||| ||| ||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
3544875 |
ttttattggttttgattgatgtttacaaaagatatactttgatggatgaacaaattaaattgatttaacttattaaattcaaagactaatttgttatttt |
3544776 |
T |
|
| Q |
248 |
gtaagtttgaggactaagttgctctactaaacaatttcaagaacaaaaatgagatcaactagataatttt |
317 |
Q |
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| T |
3544775 |
gtaagtttaaggactaaattgctccactaaacaatttcaagaacaaaaatgagatcaactagataatttt |
3544706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 3558793 - 3558742
Alignment:
| Q |
4 |
tatttaagattgtgagctgagaagtcattttcaaagtttaattctcccaaac |
55 |
Q |
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| T |
3558793 |
tatttaagattgtgagctgagaagtcattttcaaagtttaattcccccaaac |
3558742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 33459329 - 33459404
Alignment:
| Q |
139 |
caatatgcatttcttttattgattttaatggatgtttataaaagacatattttgatggatgaacaaaattgattga |
214 |
Q |
| |
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||||||| || |||||||||| |||| ||||||||||| |||||||| |||| ||| | |||| ||||||||||| |
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| T |
33459329 |
caatatgtatgtcttttattggttttgatggatgtttactaaagacatttttttatgaaggaactaaattgattga |
33459404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 126 - 259
Target Start/End: Original strand, 5085971 - 5086105
Alignment:
| Q |
126 |
agactattcaagtcaatatgcatttcttttattgattttaatggatgtttataaaagacatattttgatggatgaacaaaattgattgaacttattaaat |
225 |
Q |
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|
|||||||||||||||||||||| ||||| ||| ||||| ||||||| | ||||| |||||||||| || ||| ||||||||||| || || ||| |
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| T |
5085971 |
agactattcaagtcaatatgcaggtctttcattaattttcatggatgctagctaaagagatattttgattgaataactaaattgattgatattctttaat |
5086070 |
T |
|
| Q |
226 |
ttaaa-gactaatttgttatttcgtaagtttgagg |
259 |
Q |
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||||| |||||||||| ||||| |||| ||||||| |
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| T |
5086071 |
ttaaaggactaatttgctattttgtaaatttgagg |
5086105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 251
Target Start/End: Original strand, 41823615 - 41823716
Alignment:
| Q |
150 |
tcttttattgattttaatggatgtttataaaagacatattttgatggatgaacaaaattgattgaacttattaaatttaaagactaatttgttatttcgt |
249 |
Q |
| |
|
||||||||||||||| ||||||| ||| ||||| |||||| |||||| ||| ||||| | ||| || ||||||||||||||| ||||| ||||| || |
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| T |
41823615 |
tcttttattgattttgatggatggttactaaagagatatttggatggacgaattaaattaagtgatatttttaaatttaaagactgatttgctattttgt |
41823714 |
T |
|
| Q |
250 |
aa |
251 |
Q |
| |
|
|| |
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|
| T |
41823715 |
aa |
41823716 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 197
Target Start/End: Original strand, 34726648 - 34726721
Alignment:
| Q |
124 |
aaagactattcaagtcaatatgcatttcttttattgattttaatggatgtttataaaagacatattttgatgga |
197 |
Q |
| |
|
|||||||||| ||||||||||| || |||||||||| |||| ||||||| ||| |||| ||||||||||||| |
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| T |
34726648 |
aaagactatttaagtcaatatgtatctcttttattggttttcatggatgcttactgaagaaatattttgatgga |
34726721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 5832324 - 5832372
Alignment:
| Q |
126 |
agactattcaagtcaatatgcatttcttttattgattttaatggatgtt |
174 |
Q |
| |
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|||||||| |||||||||||||| ||||| ||||||||| | ||||||| |
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| T |
5832324 |
agactatttaagtcaatatgcatctctttcattgattttgacggatgtt |
5832372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 214
Target Start/End: Complemental strand, 34428234 - 34428147
Alignment:
| Q |
127 |
gactattcaagtcaatatgcatttcttttattgattttaatggatgtttataaaagacatattttgatggatgaacaaaattgattga |
214 |
Q |
| |
|
||||||| |||| |||||||| ||||| |||| |||| || ||||||||| || || ||||||||||||| | || ||||||||||| |
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|
| T |
34428234 |
gactattgaagttgatatgcatgtctttcattggttttgatagatgtttatgaatgagatattttgatggagggactaaattgattga |
34428147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 34898095 - 34898149
Alignment:
| Q |
135 |
aagtcaatatgcatttcttttattgattttaatggatgtttataaaagacatatt |
189 |
Q |
| |
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|||||||||||||| |||||||||| |||| ||||||||||| ||||| ||||| |
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|
| T |
34898095 |
aagtcaatatgcatgtcttttattggttttgatggatgtttactaaagaaatatt |
34898149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 208
Target Start/End: Complemental strand, 29284114 - 29284036
Alignment:
| Q |
128 |
actattcaagtcaatatgcatttcttttattgattttaatggatgtttataaaagacatattttgatggatgaacaaaatt |
208 |
Q |
| |
|
|||||| ||||||||| || ||||||||||||||| |||||| |||||||| | |||||||||||||| ||| ||||| |
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|
| T |
29284114 |
actatttaagtcaatacttatgtcttttattgattttgatggatttttataaa--aaatattttgatggataaactaaatt |
29284036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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