View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3823_high_10 (Length: 404)
Name: NF3823_high_10
Description: NF3823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3823_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 8 - 386
Target Start/End: Original strand, 29429064 - 29429444
Alignment:
| Q |
8 |
gagaagcaaaggaagaaaaatttattgtggtaggtaatatgcactatagcaaacttaaaatgagagcctaaacttcatcttacagaacacaaaacttaaa |
107 |
Q |
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| T |
29429064 |
gagaaacaaaggaagaaacatttattgtggtaggtaatatgcactatagcaaacttaaaatgagagcctaaacttcatcttacagaacacaaaactttaa |
29429163 |
T |
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| Q |
108 |
tgaaagttctttttt--cgccccatgatcttattgccaaaacaaaattctgagatagaaagtgtctacttacgagaatacgacaaatttgctgttcaatt |
205 |
Q |
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| T |
29429164 |
tgaaagtttttttttttcgcctcatgatcttattgccaaaacaaaattctgagatagaaagtgtctacttacaagaatacgacaaatttgctgttcaatt |
29429263 |
T |
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| Q |
206 |
ttgaagaaggaagtctctaaagcttcaaccctgcctgtggcatggcaacagtcacatggttcactaaccatgaatgtcacacttggtcgaacctgtcaaa |
305 |
Q |
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| T |
29429264 |
ttgaagaaggaagtctctaaagcttcaaccctgcctgtggcatggcaacagtcacatggttcactaaccatgaatgtcacacttggtcgaacctgtcaaa |
29429363 |
T |
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| Q |
306 |
tattggtaaaacatttgtaatttattgtgacaagtcctactaaaattgattgagtgatatgccaacaatcaaccagaatgc |
386 |
Q |
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| T |
29429364 |
tattggtaaaacatttgtaatttattgtgacaagtcctactaaaattgattgagtgatatgccaacaatcaaccagaatgc |
29429444 |
T |
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