View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3823_high_11 (Length: 384)

Name: NF3823_high_11
Description: NF3823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3823_high_11
NF3823_high_11
[»] chr7 (18 HSPs)
chr7 (233-376)||(44480844-44480987)
chr7 (19-148)||(44480631-44480760)
chr7 (284-380)||(22289336-22289428)
chr7 (282-379)||(16098583-16098676)
chr7 (235-281)||(1983036-1983082)
chr7 (236-281)||(1975921-1975966)
chr7 (282-380)||(3601745-3601839)
chr7 (282-380)||(29200955-29201049)
chr7 (281-352)||(16732025-16732096)
chr7 (281-352)||(17710159-17710230)
chr7 (282-357)||(30493629-30493704)
chr7 (235-281)||(1975287-1975333)
chr7 (235-281)||(7908349-7908395)
chr7 (235-281)||(33654029-33654075)
chr7 (240-281)||(9327967-9328008)
chr7 (236-281)||(24463342-24463387)
chr7 (233-281)||(12422994-12423042)
chr7 (233-269)||(36342243-36342279)
[»] chr2 (18 HSPs)
chr2 (282-357)||(34695923-34695998)
chr2 (282-357)||(34718335-34718410)
chr2 (235-281)||(21391475-21391521)
chr2 (235-281)||(26968241-26968287)
chr2 (237-281)||(5612815-5612859)
chr2 (233-269)||(10651943-10651979)
chr2 (235-275)||(12068099-12068139)
chr2 (233-269)||(39007648-39007684)
chr2 (233-280)||(42873811-42873858)
chr2 (239-281)||(13324501-13324543)
chr2 (235-281)||(14136646-14136692)
chr2 (236-281)||(23389994-23390039)
chr2 (236-281)||(40443506-40443551)
chr2 (236-281)||(40504683-40504728)
chr2 (233-269)||(19000407-19000443)
chr2 (233-269)||(30410412-30410448)
chr2 (233-269)||(39146398-39146434)
chr2 (233-281)||(41421848-41421896)
[»] chr5 (16 HSPs)
chr5 (282-380)||(26597457-26597551)
chr5 (282-357)||(8388179-8388254)
chr5 (281-380)||(20205047-20205142)
chr5 (281-380)||(25730900-25730995)
chr5 (235-280)||(10596614-10596659)
chr5 (236-281)||(24363006-24363051)
chr5 (284-357)||(30222857-30222930)
chr5 (286-379)||(4268196-4268285)
chr5 (233-269)||(38425513-38425549)
chr5 (235-274)||(8646787-8646826)
chr5 (233-280)||(16429739-16429786)
chr5 (236-279)||(30889137-30889180)
chr5 (235-281)||(26402955-26403001)
chr5 (235-281)||(37978246-37978292)
chr5 (235-279)||(16218829-16218873)
chr5 (235-279)||(19442430-19442474)
[»] chr3 (17 HSPs)
chr3 (282-380)||(27608903-27608997)
chr3 (282-357)||(34497391-34497466)
chr3 (282-380)||(55199604-55199698)
chr3 (236-281)||(18386615-18386660)
chr3 (233-281)||(28511418-28511466)
chr3 (282-379)||(53497125-53497218)
chr3 (233-280)||(28482606-28482653)
chr3 (281-357)||(647182-647258)
chr3 (322-357)||(19117739-19117774)
chr3 (282-352)||(24176863-24176933)
chr3 (236-281)||(35547227-35547273)
chr3 (284-357)||(46007394-46007467)
chr3 (236-273)||(46672191-46672228)
chr3 (236-281)||(51419586-51419631)
chr3 (233-269)||(13626694-13626730)
chr3 (233-269)||(26324621-26324657)
chr3 (281-357)||(42340296-42340372)
[»] chr4 (27 HSPs)
chr4 (282-380)||(51259529-51259623)
chr4 (235-277)||(20943678-20943720)
chr4 (235-281)||(22008008-22008054)
chr4 (235-281)||(30188506-30188552)
chr4 (235-281)||(35683369-35683415)
chr4 (235-281)||(43621980-43622026)
chr4 (233-275)||(44380902-44380944)
chr4 (235-281)||(46472761-46472807)
chr4 (233-281)||(875139-875187)
chr4 (233-269)||(38348467-38348503)
chr4 (283-380)||(43840306-43840399)
chr4 (236-279)||(16946194-16946237)
chr4 (235-281)||(8080484-8080530)
chr4 (235-281)||(16071663-16071709)
chr4 (235-281)||(16072032-16072078)
chr4 (235-281)||(24977219-24977265)
chr4 (235-269)||(29963119-29963153)
chr4 (235-269)||(48736486-48736520)
chr4 (236-269)||(11987251-11987284)
chr4 (238-279)||(22529332-22529373)
chr4 (282-380)||(29655666-29655760)
chr4 (236-281)||(34374056-34374101)
chr4 (282-351)||(41835336-41835405)
chr4 (236-281)||(45429421-45429466)
chr4 (233-281)||(8080115-8080163)
chr4 (233-281)||(39766601-39766649)
chr4 (233-281)||(45429075-45429123)
[»] chr1 (30 HSPs)
chr1 (282-380)||(48949724-48949818)
chr1 (282-380)||(51113408-51113502)
chr1 (235-281)||(46801780-46801826)
chr1 (236-281)||(11094131-11094176)
chr1 (233-281)||(18104699-18104747)
chr1 (233-269)||(26610476-26610512)
chr1 (282-379)||(44527346-44527439)
chr1 (233-281)||(52826950-52826998)
chr1 (236-275)||(37848115-37848154)
chr1 (235-269)||(9478926-9478960)
chr1 (235-281)||(18302452-18302498)
chr1 (235-269)||(28868432-28868466)
chr1 (236-281)||(30222356-30222402)
chr1 (235-269)||(33417913-33417947)
chr1 (235-281)||(39368429-39368475)
chr1 (235-281)||(43846405-43846451)
chr1 (282-380)||(2885316-2885410)
chr1 (282-380)||(5609432-5609526)
chr1 (236-281)||(6012192-6012237)
chr1 (235-276)||(9003749-9003790)
chr1 (233-262)||(15213776-15213805)
chr1 (235-276)||(37232769-37232810)
chr1 (233-281)||(14420916-14420964)
chr1 (233-269)||(15600280-15600316)
chr1 (233-269)||(18630437-18630473)
chr1 (233-269)||(30222001-30222037)
chr1 (236-276)||(33524236-33524276)
chr1 (236-280)||(34070015-34070059)
chr1 (233-281)||(35950373-35950421)
chr1 (233-269)||(44778816-44778852)
[»] chr8 (18 HSPs)
chr8 (282-357)||(8451142-8451217)
chr8 (235-281)||(11097046-11097092)
chr8 (233-276)||(43536199-43536242)
chr8 (281-379)||(23854024-23854118)
chr8 (236-280)||(21141877-21141921)
chr8 (322-361)||(478071-478110)
chr8 (235-281)||(2828542-2828588)
chr8 (235-281)||(8525325-8525371)
chr8 (235-281)||(9531918-9531964)
chr8 (235-281)||(22653133-22653179)
chr8 (235-276)||(7016544-7016585)
chr8 (236-281)||(14395352-14395397)
chr8 (233-269)||(7227004-7227040)
chr8 (233-281)||(9376136-9376184)
chr8 (281-357)||(13415115-13415191)
chr8 (233-281)||(15898379-15898427)
chr8 (233-281)||(18558409-18558457)
chr8 (233-261)||(32719775-32719803)
[»] chr6 (8 HSPs)
chr6 (282-357)||(15053194-15053269)
chr6 (282-380)||(28107232-28107326)
chr6 (233-280)||(21215351-21215398)
chr6 (235-281)||(9373380-9373426)
chr6 (235-279)||(1092157-1092201)
chr6 (282-346)||(15606024-15606088)
chr6 (235-275)||(16464827-16464867)
chr6 (281-357)||(19690898-19690974)
[»] scaffold0111 (1 HSPs)
scaffold0111 (235-281)||(40394-40440)
[»] scaffold0121 (1 HSPs)
scaffold0121 (233-281)||(2995-3043)
[»] scaffold0683 (1 HSPs)
scaffold0683 (236-281)||(3254-3299)


Alignment Details
Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 233 - 376
Target Start/End: Original strand, 44480844 - 44480987
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccacttttattccctaaaaaagttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccg 332  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||    
T  44480844 ttgttttagtccctctaacaaatttcttccacttttattccctaaaaaagttgtcttcgagtccgactccgctactctactgcaaacgttatcgtctccg 44480943  T
Q  333 ggtcatggtgattcggaattttatgatatatattgtttctagta 376  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  44480944 ggtcatggtgattcggaattttatgctatatattgtttctagta 44480987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 44480631 - 44480760
Alignment:
Q  19 aaattccagtgacagctcttagccacgaaatacctcgggttagaagtccacttcctttatagttttttaaatatataatttcaannnnnnnaaagaaact 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||    
T  44480631 aaattccagtgacagctcttagccacgaaatacctcgggttagaagtccacttcctttatagttttttaaatatataatttcaattttttaaaagaaact 44480730  T
Q  119 gagtaacgaaataattatgttatctatttc 148  Q
    ||||||| ||||||||||||||| ||||||    
T  44480731 gagtaacaaaataattatgttatatatttc 44480760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 284 - 380
Target Start/End: Original strand, 22289336 - 22289428
Alignment:
Q  284 tgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaattttatgatatatattgtttctagtattat 380  Q
    |||||||||||||||||| ||||||||| | |||| | ||||||||||||| ||||||||||| ||||||||||     ||||||||||||||||||    
T  22289336 tgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatg----ctattgtttctagtattat 22289428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 282 - 379
Target Start/End: Original strand, 16098583 - 16098676
Alignment:
Q  282 gttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaattttatgatatatattgtttctagtatta 379  Q
    ||||||||||||||||||||  |||||||| ||||||    |||||||||||| ||||||||||| ||||| ||||    ||||||||||||||||||    
T  16098583 gttgtcttcgagtccgactcatctactctagtacaagctccatcgtctccgggccatggtgattcagaattctatg----atattgtttctagtatta 16098676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 1983036 - 1983082
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||    
T  1983036 gttttagtccctctaaaaaatttcttcaacttttagtccctaaaaaa 1983082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 1975921 - 1975966
Alignment:
Q  236 ttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    |||||||||||||||||||||||||| ||||||| ||||| |||||    
T  1975921 ttttagtccctctaaaaaatttcttcaacttttagtccctcaaaaa 1975966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 380
Target Start/End: Original strand, 3601745 - 3601839
Alignment:
Q  282 gttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaattttatgatatatattgtttctagtattat 380  Q
    ||||| ||||||||||||||  |||||||| | ||||  |||||||||| ||  ||||||||||| ||||||||||     ||||||||||||||||||    
T  3601745 gttgttttcgagtccgactcatctactctagtgcaagctttatcgtctctggaccatggtgattcagaattttatg----ctattgtttctagtattat 3601839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 380
Target Start/End: Complemental strand, 29201049 - 29200955
Alignment:
Q  282 gttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaattttatgatatatattgtttctagtattat 380  Q
    |||||||||||||| ||||| ||||||||| | ||||   ||||||||| ||| ||||||||||| ||||| ||||     ||||||||||||||||||    
T  29201049 gttgtcttcgagtctgactcagctactctagtgcaagctctatcgtctctgggccatggtgattcagaattctatg----ctattgtttctagtattat 29200955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 281 - 352
Target Start/End: Original strand, 16732025 - 16732096
Alignment:
Q  281 agttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaatt 352  Q
    |||||||||||||||||||||  |||||||| | ||||   |||| |||||||| ||||||||||| |||||    
T  16732025 agttgtcttcgagtccgactcgtctactctagtgcaagctctatcatctccgggccatggtgattcagaatt 16732096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 281 - 352
Target Start/End: Original strand, 17710159 - 17710230
Alignment:
Q  281 agttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaatt 352  Q
    |||||||||||||||||||||  |||||||| | ||||   |||| |||||||| ||||||||||| |||||    
T  17710159 agttgtcttcgagtccgactcgtctactctagtgcaagctctatcatctccgggccatggtgattcagaatt 17710230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 282 - 357
Target Start/End: Complemental strand, 30493704 - 30493629
Alignment:
Q  282 gttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaattttatg 357  Q
    ||||||||||||||||||||   ||||||| | ||||   |||||||| |||| ||||||||||| ||||||||||    
T  30493704 gttgtcttcgagtccgactcaattactctagtgcaagctctatcgtcttcgggccatggtgattcagaattttatg 30493629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 1975287 - 1975333
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    ||||||||| ||||||||||||| ||| ||||||| |||||||||||    
T  1975287 gttttagtcactctaaaaaatttattcaacttttagtccctaaaaaa 1975333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 7908395 - 7908349
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    |||||||| |||||||||||||||||| ||||||| |||||| ||||    
T  7908395 gttttagttcctctaaaaaatttcttcaacttttagtccctataaaa 7908349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 33654029 - 33654075
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    |||||||||||||||||||| |||||| ||||||| ||||| |||||    
T  33654029 gttttagtccctctaaaaaaattcttcaacttttagtccctcaaaaa 33654075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 9327967 - 9328008
Alignment:
Q  240 agtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    |||||||||||||||||||||| ||||||| |||||| ||||    
T  9327967 agtccctctaaaaaatttcttcaacttttagtccctataaaa 9328008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 24463342 - 24463387
Alignment:
Q  236 ttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    |||||||||||||||||||||||||| ||||| | ||||| |||||    
T  24463342 ttttagtccctctaaaaaatttcttcaactttcagtcccttaaaaa 24463387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 12423042 - 12422994
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    |||||||||| ||| |||||||||||||| ||||||| ||| |||||||    
T  12423042 ttgttttagttcctttaaaaaatttcttcaacttttagtccttaaaaaa 12422994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 36342279 - 36342243
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccactttta 269  Q
    ||||||||||||||||||||||||||||  |||||||    
T  36342279 ttgttttagtccctctaaaaaatttctttaactttta 36342243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 282 - 357
Target Start/End: Complemental strand, 34695998 - 34695923
Alignment:
Q  282 gttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaattttatg 357  Q
    |||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||| ||||||||||    
T  34695998 gttgtcttcgagtccgactccgctactctagtgcaagcgttatcgtctccgggtcatggtgattcagaattttatg 34695923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 282 - 357
Target Start/End: Complemental strand, 34718410 - 34718335
Alignment:
Q  282 gttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaattttatg 357  Q
    |||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||| ||||||||||    
T  34718410 gttgtcttcgagtccgactccgctactctagtgcaagcgttatcgtctccgggtcatggtgattcagaattttatg 34718335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 21391521 - 21391475
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||    
T  21391521 gttttagtccctctaaaaaatttcttcaacttttagtccctaaaaaa 21391475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 26968287 - 26968241
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    ||||||||||||||||||||||||||| ||||||| ||||| |||||    
T  26968287 gttttagtccctctaaaaaatttcttcaacttttagtcccttaaaaa 26968241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 5612859 - 5612815
Alignment:
Q  237 tttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    ||||||||||||||||||||||||| ||||||| |||||| ||||    
T  5612859 tttagtccctctaaaaaatttcttcaacttttagtccctataaaa 5612815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 10651979 - 10651943
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccactttta 269  Q
    |||||||| ||||||||||||||||||||||||||||    
T  10651979 ttgttttaatccctctaaaaaatttcttccactttta 10651943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 12068139 - 12068099
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccct 275  Q
    ||||||||||||||||||||||||||| ||||||| |||||    
T  12068139 gttttagtccctctaaaaaatttcttcaacttttagtccct 12068099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 39007648 - 39007684
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccactttta 269  Q
    ||||||||||||||||||||||||||||| |||||||    
T  39007648 ttgttttagtccctctaaaaaatttcttcaactttta 39007684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 233 - 280
Target Start/End: Original strand, 42873811 - 42873858
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccacttttattccctaaaaa 280  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||| ||||    
T  42873811 ttgttttagtccctctaaaaattttcttcaacttttagtcccttaaaa 42873858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 13324543 - 13324501
Alignment:
Q  239 tagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    |||||||| |||||||||||||| ||||||||||||| |||||    
T  13324543 tagtccctttaaaaaatttcttcaacttttattcccttaaaaa 13324501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 14136692 - 14136646
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    ||||||||||||||||||| ||||||  ||||||| |||||||||||    
T  14136692 gttttagtccctctaaaaattttctttaacttttagtccctaaaaaa 14136646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 23389994 - 23390039
Alignment:
Q  236 ttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    ||||||| |||||||||||||||||| ||||||| |||||| ||||    
T  23389994 ttttagtacctctaaaaaatttcttcaacttttagtccctataaaa 23390039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 40443506 - 40443551
Alignment:
Q  236 ttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    ||||||| |||||||||||||||||| ||||||  |||||||||||    
T  40443506 ttttagttcctctaaaaaatttcttcaacttttggtccctaaaaaa 40443551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 40504683 - 40504728
Alignment:
Q  236 ttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    ||||||| |||||||||||||||||| ||||||  |||||||||||    
T  40504683 ttttagttcctctaaaaaatttcttcaacttttggtccctaaaaaa 40504728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 19000407 - 19000443
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccactttta 269  Q
    |||||||| |||||||||||||||||||| |||||||    
T  19000407 ttgttttactccctctaaaaaatttcttcgactttta 19000443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 30410448 - 30410412
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccactttta 269  Q
    ||||||||||||||||||||  |||||||||||||||    
T  30410448 ttgttttagtccctctaaaatttttcttccactttta 30410412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 39146398 - 39146434
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccactttta 269  Q
    |||||||| |||||||||||||||||||| |||||||    
T  39146398 ttgttttaatccctctaaaaaatttcttcaactttta 39146434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 41421896 - 41421848
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    ||||||||||||||||||||  || |||| ||||||| |||||||||||    
T  41421896 ttgttttagtccctctaaaattttccttcaacttttagtccctaaaaaa 41421848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 282 - 380
Target Start/End: Complemental strand, 26597551 - 26597457
Alignment:
Q  282 gttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaattttatgatatatattgtttctagtattat 380  Q
    |||||||||||||||||||| ||||||||| | |||| | ||||||||||||| ||||||||||||||||||||||     ||||||||||||||||||    
T  26597551 gttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcggaattttatg----ttattgtttctagtattat 26597457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 282 - 357
Target Start/End: Original strand, 8388179 - 8388254
Alignment:
Q  282 gttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaattttatg 357  Q
    |||||||||||||||||||| ||||||||| | |||| | |||||||||| || ||||||||||| ||||||||||    
T  8388179 gttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctccaggccatggtgattcagaattttatg 8388254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 380
Target Start/End: Original strand, 20205047 - 20205142
Alignment:
Q  281 agttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaattttatgatatatattgtttctagtattat 380  Q
    |||||||||||||||||||||  |||||||| | ||||   |||| ||||||||||||||||||||  |||| ||||     ||||||||||||||||||    
T  20205047 agttgtcttcgagtccgactcatctactctagtgcaagctctatcctctccgggtcatggtgattcaaaattctatg----ctattgtttctagtattat 20205142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 380
Target Start/End: Original strand, 25730900 - 25730995
Alignment:
Q  281 agttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaattttatgatatatattgtttctagtattat 380  Q
    |||||||||||||||||||||  |||||||| | ||||   ||||||||| ||||||||||||||  ||||| ||||     ||||||||||||||||||    
T  25730900 agttgtcttcgagtccgactcatctactctagtgcaagctctatcgtctcagggtcatggtgattaagaattctatg----ttattgtttctagtattat 25730995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 10596659 - 10596614
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccctaaaaa 280  Q
    |||||| |||||||||||||||||||| ||||||| ||||||||||    
T  10596659 gttttaatccctctaaaaaatttcttcaacttttagtccctaaaaa 10596614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 24363051 - 24363006
Alignment:
Q  236 ttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    |||||||||||||||||||||||||| ||||||| |||||| ||||    
T  24363051 ttttagtccctctaaaaaatttcttcaacttttagtccctataaaa 24363006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 357
Target Start/End: Complemental strand, 30222930 - 30222857
Alignment:
Q  284 tgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaattttatg 357  Q
    ||||||||| || ||||| ||||||||| | |||| | |||||||| ||||||| |||||||||||||| ||||    
T  30222930 tgtcttcgaatctgactcagctactctagtgcaagcgctatcgtcttcgggtcacggtgattcggaattctatg 30222857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 379
Target Start/End: Original strand, 4268196 - 4268285
Alignment:
Q  286 tcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaattttatgatatatattgtttctagtatta 379  Q
    ||||||||||||||||  |||||||| | ||||   |||| |||||||| ||||||||||||||||| ||||     |||||||||||||||||    
T  4268196 tcttcgagtccgactcatctactctagtgcaagctctatcatctccgggccatggtgattcggaattctatg----ctattgtttctagtatta 4268285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 38425549 - 38425513
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccactttta 269  Q
    ||||||||||||||||||||||||||||| |||||||    
T  38425549 ttgttttagtccctctaaaaaatttcttcaactttta 38425513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 274
Target Start/End: Original strand, 8646787 - 8646826
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccc 274  Q
    ||||||||||||||||||||||||||| ||||||| ||||    
T  8646787 gttttagtccctctaaaaaatttcttcgacttttagtccc 8646826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 233 - 280
Target Start/End: Original strand, 16429739 - 16429786
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccacttttattccctaaaaa 280  Q
    ||||||||||||||||||||| ||||||| | ||||| ||||||||||    
T  16429739 ttgttttagtccctctaaaaagtttcttcaatttttagtccctaaaaa 16429786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 236 - 279
Target Start/End: Complemental strand, 30889180 - 30889137
Alignment:
Q  236 ttttagtccctctaaaaaatttcttccacttttattccctaaaa 279  Q
    |||||||||||||||||||||||||| | ||||| |||||||||    
T  30889180 ttttagtccctctaaaaaatttcttcaatttttagtccctaaaa 30889137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 26403001 - 26402955
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    ||||||||||||||||||| ||||||| ||||||| |||||| ||||    
T  26403001 gttttagtccctctaaaaattttcttcaacttttagtccctataaaa 26402955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 37978246 - 37978292
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    |||||||||||| |||||| ||||||| ||||||| |||||||||||    
T  37978246 gttttagtccctttaaaaattttcttcaacttttagtccctaaaaaa 37978292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 16218873 - 16218829
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccctaaaa 279  Q
    |||||||||  |||||||||||||||| ||||||| |||||||||    
T  16218873 gttttagtcattctaaaaaatttcttcaacttttagtccctaaaa 16218829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 19442430 - 19442474
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccctaaaa 279  Q
    |||||||||||||||||||| |||||| ||||||| | |||||||    
T  19442430 gttttagtccctctaaaaaaattcttcaacttttagttcctaaaa 19442474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 282 - 380
Target Start/End: Complemental strand, 27608997 - 27608903
Alignment:
Q  282 gttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaattttatgatatatattgtttctagtattat 380  Q
    |||||||||||||||||||| ||||||||| | |||| | ||||||||||||| ||||||||||||||||||||||     ||||||||||||||||||    
T  27608997 gttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcggaattttatg----ctattgtttctagtattat 27608903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 282 - 357
Target Start/End: Complemental strand, 34497466 - 34497391
Alignment:
Q  282 gttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaattttatg 357  Q
    |||||||||||||||||||| ||||||||| | |||| | ||||||||||||| ||||||||||||||||||||||    
T  34497466 gttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcggaattttatg 34497391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 282 - 380
Target Start/End: Original strand, 55199604 - 55199698
Alignment:
Q  282 gttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaattttatgatatatattgtttctagtattat 380  Q
    ||||||||| |||||||||| ||||||||  | |||| | |||||||| |||||||||||||||||||||||||||     ||||||||||||||||||    
T  55199604 gttgtcttcaagtccgactcagctactctggtgcaagcgctatcgtctacgggtcatggtgattcggaattttatg----ctattgtttctagtattat 55199698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 18386660 - 18386615
Alignment:
Q  236 ttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||    
T  18386660 ttttagtccctctaaaaaatttcttcaacttttattccctcaaaaa 18386615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 28511418 - 28511466
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    ||||||||||||||||||||||||||||| ||||||| || ||||||||    
T  28511418 ttgttttagtccctctaaaaaatttcttcaacttttagtctctaaaaaa 28511466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 282 - 379
Target Start/End: Original strand, 53497125 - 53497218
Alignment:
Q  282 gttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaattttatgatatatattgtttctagtatta 379  Q
    ||||||||||||||||||||  |||||||  | ||||   ||||||||||||| ||||||||||||||||| ||||     |||||||||||||||||    
T  53497125 gttgtcttcgagtccgactcatctactcttgtgcaagctctatcgtctccgggccatggtgattcggaattctatg----ctattgtttctagtatta 53497218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 280
Target Start/End: Original strand, 28482606 - 28482653
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccacttttattccctaaaaa 280  Q
    ||||||||||||||||||||||||||||| ||||||| || |||||||    
T  28482606 ttgttttagtccctctaaaaaatttcttcaacttttagtctctaaaaa 28482653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 357
Target Start/End: Complemental strand, 647258 - 647182
Alignment:
Q  281 agttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaattttatg 357  Q
    |||| |||||||||| |||||  |||||||| | ||||   ||||||||||||| ||||||||||||||||| ||||    
T  647258 agttatcttcgagtctgactcatctactctagtgcaagctctatcgtctccgggccatggtgattcggaattctatg 647182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 357
Target Start/End: Complemental strand, 19117774 - 19117739
Alignment:
Q  322 tatcgtctccgggtcatggtgattcggaattttatg 357  Q
    ||||||||||||| ||||||||||||||||||||||    
T  19117774 tatcgtctccgggccatggtgattcggaattttatg 19117739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 24176863 - 24176933
Alignment:
Q  282 gttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaatt 352  Q
    |||||||||||||| ||| |  |||||||| | ||||   ||||||||| |||||||||||||||||||||    
T  24176863 gttgtcttcgagtctgacacaactactctagtgcaagctctatcgtctctgggtcatggtgattcggaatt 24176933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 35547227 - 35547273
Alignment:
Q  236 ttttagtccctctaaaaaatttcttccactttt-attccctaaaaaa 281  Q
    |||||||||||||||||||||||||| |||||| |||||| ||||||    
T  35547227 ttttagtccctctaaaaaatttcttcaacttttaattcccaaaaaaa 35547273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 357
Target Start/End: Original strand, 46007394 - 46007467
Alignment:
Q  284 tgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaattttatg 357  Q
    ||||||||||||||| ||  |||||||| | |||    ||||||||||||| ||||| ||||||||||||||||    
T  46007394 tgtcttcgagtccgattcaactactctagtgcaaactatatcgtctccgggccatggcgattcggaattttatg 46007467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 273
Target Start/End: Original strand, 46672191 - 46672228
Alignment:
Q  236 ttttagtccctctaaaaaatttcttccacttttattcc 273  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  46672191 ttttagtccctttaaaaaatttcttcgacttttattcc 46672228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 51419586 - 51419631
Alignment:
Q  236 ttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    |||||||||||||||||| ||||||| ||||||| |||||| ||||    
T  51419586 ttttagtccctctaaaaattttcttcaacttttagtccctataaaa 51419631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 13626730 - 13626694
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccactttta 269  Q
    |||||||||||||||||||||| |||||| |||||||    
T  13626730 ttgttttagtccctctaaaaaaattcttcaactttta 13626694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 26324657 - 26324621
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccactttta 269  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  26324657 ttgttttagtccctctaaaaattttcttcaactttta 26324621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 357
Target Start/End: Complemental strand, 42340372 - 42340296
Alignment:
Q  281 agttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaattttatg 357  Q
    ||||||||||||||| ||||| |||||| || | ||||   | ||||||||||| ||||||||||| ||||| ||||    
T  42340372 agttgtcttcgagtcagactcagctactttagtgcaagctctgtcgtctccgggccatggtgattcagaattctatg 42340296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 282 - 380
Target Start/End: Complemental strand, 51259623 - 51259529
Alignment:
Q  282 gttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaattttatgatatatattgtttctagtattat 380  Q
    |||||||||||||||||||| ||||||||| | |||| | |||||||| |||| ||||||||||| ||||||||||     ||||||||||||||||||    
T  51259623 gttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtcttcgggccatggtgattcagaattttatg----ttattgtttctagtattat 51259529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 277
Target Start/End: Complemental strand, 20943720 - 20943678
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccctaa 277  Q
    ||||||||||||||||||||||||||| ||||||| |||||||    
T  20943720 gttttagtccctctaaaaaatttcttcaacttttagtccctaa 20943678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 22008008 - 22008054
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    ||||||||||||||||||||||||||| ||||||| |||||| ||||    
T  22008008 gttttagtccctctaaaaaatttcttcaacttttagtccctataaaa 22008054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 30188552 - 30188506
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    ||||||||||||||||||||||||||| ||||||| |||||| ||||    
T  30188552 gttttagtccctctaaaaaatttcttcaacttttagtccctataaaa 30188506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 35683369 - 35683415
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    |||||| |||||||||||||||||||| ||||||| |||||||||||    
T  35683369 gttttaatccctctaaaaaatttcttcaacttttagtccctaaaaaa 35683415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 43621980 - 43622026
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    ||||||||||||||||||||||||||| ||||||| |||||| ||||    
T  43621980 gttttagtccctctaaaaaatttcttcaacttttagtccctataaaa 43622026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 275
Target Start/End: Complemental strand, 44380944 - 44380902
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccacttttattccct 275  Q
    ||||||||||||||||||||||||||||| ||||||| |||||    
T  44380944 ttgttttagtccctctaaaaaatttcttcaacttttagtccct 44380902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 46472761 - 46472807
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    ||||||||||||||||||||||||||| ||||||| ||||| |||||    
T  46472761 gttttagtccctctaaaaaatttcttcaacttttagtccctcaaaaa 46472807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 875187 - 875139
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    |||||||||||||||||||||||||||||  |||||| |||||| ||||    
T  875187 ttgttttagtccctctaaaaaatttcttcaccttttagtccctataaaa 875139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 38348467 - 38348503
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccactttta 269  Q
    ||||||||||||||||||||||||||||| |||||||    
T  38348467 ttgttttagtccctctaaaaaatttcttcaactttta 38348503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 380
Target Start/End: Complemental strand, 43840399 - 43840306
Alignment:
Q  283 ttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaattttatgatatatattgtttctagtattat 380  Q
    |||||||||||| |||||| ||||||||| | ||||   |||||||| |||  ||||||||||||||||| ||||     ||||||||||||||||||    
T  43840399 ttgtcttcgagttcgactcagctactctaatgcaagctctatcgtcttcggaccatggtgattcggaattctatg----ctattgtttctagtattat 43840306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 236 - 279
Target Start/End: Original strand, 16946194 - 16946237
Alignment:
Q  236 ttttagtccctctaaaaaatttcttccacttttattccctaaaa 279  Q
    |||||||||||||||||||||||||| ||||||| |||| ||||    
T  16946194 ttttagtccctctaaaaaatttcttcaacttttagtccccaaaa 16946237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 8080530 - 8080484
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    ||||||||||||||||||| ||||||| ||||||| |||||| ||||    
T  8080530 gttttagtccctctaaaaattttcttcaacttttagtccctataaaa 8080484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 16071663 - 16071709
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    ||||||||||||||||||||||||||  ||||||| ||||| |||||    
T  16071663 gttttagtccctctaaaaaatttctttaacttttagtccctcaaaaa 16071709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 16072078 - 16072032
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    |||||||||||||||||| |||||||| ||||||| |||||| ||||    
T  16072078 gttttagtccctctaaaatatttcttcaacttttagtccctataaaa 16072032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 24977265 - 24977219
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    |||||| |||||||||||||||||||| ||||||| |||||| ||||    
T  24977265 gttttaatccctctaaaaaatttcttcaacttttagtccctataaaa 24977219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 269
Target Start/End: Original strand, 29963119 - 29963153
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccactttta 269  Q
    ||||||||||||||||||||||||||| |||||||    
T  29963119 gttttagtccctctaaaaaatttcttcaactttta 29963153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 269
Target Start/End: Complemental strand, 48736520 - 48736486
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccactttta 269  Q
    ||||||||||||||||||||||||||| |||||||    
T  48736520 gttttagtccctctaaaaaatttcttcaactttta 48736486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 269
Target Start/End: Original strand, 11987251 - 11987284
Alignment:
Q  236 ttttagtccctctaaaaaatttcttccactttta 269  Q
    |||||||||||||||||||||||||| |||||||    
T  11987251 ttttagtccctctaaaaaatttcttcaactttta 11987284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 279
Target Start/End: Original strand, 22529332 - 22529373
Alignment:
Q  238 ttagtccctctaaaaaatttcttccacttttattccctaaaa 279  Q
    |||||||||||||||||||||||| ||||||| ||| |||||    
T  22529332 ttagtccctctaaaaaatttcttcaacttttagtccttaaaa 22529373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 380
Target Start/End: Complemental strand, 29655760 - 29655666
Alignment:
Q  282 gttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaattttatgatatatattgtttctagtattat 380  Q
    |||||||||||||| |||| |||||||||| | ||||   |||| ||| |||| ||||||||||| ||||| ||||     ||||||||||||||||||    
T  29655760 gttgtcttcgagtctgactacgctactctagtgcaagctctatcatcttcgggccatggtgattcagaattctatg----ttattgtttctagtattat 29655666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 34374056 - 34374101
Alignment:
Q  236 ttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    |||||||||||||||||| ||||||| ||||||| |||||| ||||    
T  34374056 ttttagtccctctaaaaattttcttcaacttttagtccctataaaa 34374101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 351
Target Start/End: Complemental strand, 41835405 - 41835336
Alignment:
Q  282 gttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaat 351  Q
    ||||||||||||| ||| ||  |||||||| | |||  | ||||||||||||| ||||||||||||||||    
T  41835405 gttgtcttcgagttcgattcatctactctagtgcaaacgctatcgtctccgggccatggtgattcggaat 41835336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 45429466 - 45429421
Alignment:
Q  236 ttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    |||||||||||||||||| ||||||| ||||||| |||||| ||||    
T  45429466 ttttagtccctctaaaaattttcttcaacttttagtccctataaaa 45429421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 8080115 - 8080163
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    ||||||||||||||||||||  || |||| ||||||| |||||||||||    
T  8080115 ttgttttagtccctctaaaattttccttcaacttttagtccctaaaaaa 8080163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 39766601 - 39766649
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    ||||||||||||||||||||  || |||| ||||||| |||||||||||    
T  39766601 ttgttttagtccctctaaaattttccttcaacttttagtccctaaaaaa 39766649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 45429075 - 45429123
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    ||||||||||||||||||||  ||||||| ||||||| ||||| |||||    
T  45429075 ttgttttagtccctctaaaagttttcttcaacttttagtccctcaaaaa 45429123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 282 - 380
Target Start/End: Complemental strand, 48949818 - 48949724
Alignment:
Q  282 gttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaattttatgatatatattgtttctagtattat 380  Q
    ||||||||||||| | |||| ||||||||| | |||| | ||||||||||||| ||||||||||||||||||||||     ||||||||||||||||||    
T  48949818 gttgtcttcgagttcaactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcggaattttatg----ctattgtttctagtattat 48949724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 282 - 380
Target Start/End: Original strand, 51113408 - 51113502
Alignment:
Q  282 gttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaattttatgatatatattgtttctagtattat 380  Q
    |||||||||||||||||||| ||||||||| | |||| | ||||||||| ||| |||||||||||||| |||||||     ||||||||||||||||||    
T  51113408 gttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctctgggccatggtgattcggagttttatg----ctattgtttctagtattat 51113502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 46801780 - 46801826
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    |||||| |||||||||||||||||||| |||||||||||||| ||||    
T  46801780 gttttaatccctctaaaaaatttcttcaacttttattccctataaaa 46801826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 11094131 - 11094176
Alignment:
Q  236 ttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    |||||||||||||||||||||||||| || |||| |||||||||||    
T  11094131 ttttagtccctctaaaaaatttcttcaacatttagtccctaaaaaa 11094176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 18104747 - 18104699
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    ||||||||||||||||||||||||||||| | ||||| |||||| ||||    
T  18104747 ttgttttagtccctctaaaaaatttcttcaaattttagtccctataaaa 18104699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 26610476 - 26610512
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccactttta 269  Q
    ||||||||||||||||||||||||||||| |||||||    
T  26610476 ttgttttagtccctctaaaaaatttcttcgactttta 26610512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 379
Target Start/End: Original strand, 44527346 - 44527439
Alignment:
Q  282 gttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaattttatgatatatattgtttctagtatta 379  Q
    ||||||||||||||||||||  |||||||  | ||||   |||| |||||||| ||||||||||||||||| ||||     |||||||||||||||||    
T  44527346 gttgtcttcgagtccgactcatctactcttgtgcaagctctatcatctccgggccatggtgattcggaattctatg----ctattgtttctagtatta 44527439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 52826998 - 52826950
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    ||||||||||||||||||||| ||||||| ||||||| |||||| ||||    
T  52826998 ttgttttagtccctctaaaaattttcttcaacttttagtccctacaaaa 52826950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 236 - 275
Target Start/End: Complemental strand, 37848154 - 37848115
Alignment:
Q  236 ttttagtccctctaaaaaatttcttccacttttattccct 275  Q
    |||||||||||||||||||||||||| ||||||| |||||    
T  37848154 ttttagtccctctaaaaaatttcttcaacttttagtccct 37848115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 269
Target Start/End: Original strand, 9478926 - 9478960
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccactttta 269  Q
    ||||||||||||||||||||||||||| |||||||    
T  9478926 gttttagtccctctaaaaaatttcttcaactttta 9478960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 18302498 - 18302452
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    |||||||||||||||||||| |||||| ||||||| ||||| |||||    
T  18302498 gttttagtccctctaaaaaaattcttcaacttttagtccctcaaaaa 18302452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 269
Target Start/End: Complemental strand, 28868466 - 28868432
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccactttta 269  Q
    ||||||||||||||||||||||||||| |||||||    
T  28868466 gttttagtccctctaaaaaatttcttcaactttta 28868432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 30222402 - 30222356
Alignment:
Q  236 ttttagtccctctaaaaaatttcttccacttttattcc-ctaaaaaa 281  Q
    ||||| |||||||||||||||||||||||||||| ||| ||||||||    
T  30222402 ttttaatccctctaaaaaatttcttccacttttagtcctctaaaaaa 30222356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 269
Target Start/End: Complemental strand, 33417947 - 33417913
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccactttta 269  Q
    ||||||||||||||||||||||||||| |||||||    
T  33417947 gttttagtccctctaaaaaatttcttcaactttta 33417913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 39368475 - 39368429
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    |||||||||||| |||||||||||||| ||||||| ||||| |||||    
T  39368475 gttttagtccctttaaaaaatttcttcaacttttagtccctcaaaaa 39368429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 43846405 - 43846451
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    ||||||| ||||||||||||||||||| ||||||| |||||| ||||    
T  43846405 gttttagcccctctaaaaaatttcttcaacttttagtccctataaaa 43846451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 380
Target Start/End: Original strand, 2885316 - 2885410
Alignment:
Q  282 gttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaattttatgatatatattgtttctagtattat 380  Q
    |||||||||||||| ||||| ||||||||| | ||||   |||||||| ||||  ||||||||||||| || ||||     ||||||||||||||||||    
T  2885316 gttgtcttcgagtcagactcagctactctagtgcaagctctatcgtcttcgggctatggtgattcggagttatatg----ctattgtttctagtattat 2885410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 380
Target Start/End: Original strand, 5609432 - 5609526
Alignment:
Q  282 gttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaattttatgatatatattgtttctagtattat 380  Q
    ||||||||||||| ||||||  |||||||| | |||    ||||||||| ||||||||||||||| ||||| ||||     ||||||||||||||||||    
T  5609432 gttgtcttcgagttcgactcatctactctagtgcaaactctatcgtctcagggtcatggtgattcagaattctatg----ctattgtttctagtattat 5609526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 6012192 - 6012237
Alignment:
Q  236 ttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||    
T  6012192 ttttattccctctaaaaaatttcttcgacttttagtccctataaaa 6012237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 9003749 - 9003790
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattcccta 276  Q
    |||||||||| |||||||||||||||| ||||||| ||||||    
T  9003749 gttttagtccttctaaaaaatttcttcaacttttaatcccta 9003790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 262
Target Start/End: Complemental strand, 15213805 - 15213776
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttcc 262  Q
    ||||||||||||||||||||||||||||||    
T  15213805 ttgttttagtccctctaaaaaatttcttcc 15213776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 37232810 - 37232769
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattcccta 276  Q
    ||||||||||||| ||||||||||||| ||||||| ||||||    
T  37232810 gttttagtccctccaaaaaatttcttcaacttttagtcccta 37232769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 14420964 - 14420916
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    ||||||||||||||||||||  || |||| ||||||| |||||||||||    
T  14420964 ttgttttagtccctctaaaattttccttcaacttttagtccctaaaaaa 14420916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 15600280 - 15600316
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccactttta 269  Q
    |||||||||||||||||||||| |||||| |||||||    
T  15600280 ttgttttagtccctctaaaaaaattcttcaactttta 15600316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 18630473 - 18630437
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccactttta 269  Q
    ||||||||||||||||||||||||||||  |||||||    
T  18630473 ttgttttagtccctctaaaaaatttctttaactttta 18630437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 30222001 - 30222037
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccactttta 269  Q
    |||||||||| |||||||||||||||||| |||||||    
T  30222001 ttgttttagttcctctaaaaaatttcttcgactttta 30222037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 276
Target Start/End: Complemental strand, 33524276 - 33524236
Alignment:
Q  236 ttttagtccctctaaaaaatttcttccacttttattcccta 276  Q
    |||||||||||||||||| ||||||| ||||||| ||||||    
T  33524276 ttttagtccctctaaaaattttcttcaacttttagtcccta 33524236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 34070059 - 34070015
Alignment:
Q  236 ttttagtccctctaaaaaatttcttccacttttattccctaaaaa 280  Q
    ||||||||| |||||||||||||||| ||||||| ||||| ||||    
T  34070059 ttttagtccttctaaaaaatttcttcaacttttaatccctcaaaa 34070015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 35950373 - 35950421
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    ||||||||||||||||||||  || |||| ||||||| |||||||||||    
T  35950373 ttgttttagtccctctaaaattttccttcgacttttagtccctaaaaaa 35950421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 44778852 - 44778816
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccactttta 269  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  44778852 ttgttttagtccctctaaaaattttcttcaactttta 44778816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 282 - 357
Target Start/End: Complemental strand, 8451217 - 8451142
Alignment:
Q  282 gttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaattttatg 357  Q
    |||||||||||||| |||||  ||||| || | ||||  ||||||||||| |||||||||||||||||||||||||    
T  8451217 gttgtcttcgagtctgactcatctactttagtgcaagctttatcgtctccaggtcatggtgattcggaattttatg 8451142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 11097092 - 11097046
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||    
T  11097092 gttttagtccctctaaaaaatttcttcaacttttagtccctaaaaaa 11097046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 276
Target Start/End: Complemental strand, 43536242 - 43536199
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccacttttattcccta 276  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||    
T  43536242 ttgttttagtccctctaaaaaatttcttcaacttttagtcccta 43536199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 379
Target Start/End: Original strand, 23854024 - 23854118
Alignment:
Q  281 agttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaattttatgatatatattgtttctagtatta 379  Q
    |||||||||||||||||||||  | |||||| | ||||   ||||||||||||| ||||||||||| ||||| ||||     |||||||||||||||||    
T  23854024 agttgtcttcgagtccgactcatcaactctagtgcaagctctatcgtctccgggccatggtgattcagaattctatg----ctattgtttctagtatta 23854118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 21141877 - 21141921
Alignment:
Q  236 ttttagtccctctaaaaaatttcttccacttttattccctaaaaa 280  Q
    |||||||||||||||||||||||||| ||||||| ||||| ||||    
T  21141877 ttttagtccctctaaaaaatttcttcaacttttagtccctcaaaa 21141921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 361
Target Start/End: Complemental strand, 478110 - 478071
Alignment:
Q  322 tatcgtctccgggtcatggtgattcggaattttatgatat 361  Q
    |||||||||||||| |||||||||||| ||||||||||||    
T  478110 tatcgtctccgggttatggtgattcggtattttatgatat 478071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 2828542 - 2828588
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    |||||||||||| |||||||||||||| ||||||| ||||| |||||    
T  2828542 gttttagtccctttaaaaaatttcttcaacttttagtccctcaaaaa 2828588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 8525325 - 8525371
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    ||||||||||||||||||| ||||||| ||||||| ||||| |||||    
T  8525325 gttttagtccctctaaaaattttcttcaacttttagtcccttaaaaa 8525371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 9531964 - 9531918
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    |||||||| |||||||||||||||||| ||||||| |||||| ||||    
T  9531964 gttttagttcctctaaaaaatttcttcaacttttaatccctataaaa 9531918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 22653179 - 22653133
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    |||||||||  |||||||||||||||| ||||||| |||||||||||    
T  22653179 gttttagtcattctaaaaaatttcttcaacttttagtccctaaaaaa 22653133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 7016544 - 7016585
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattcccta 276  Q
    ||||||||||||||||||| ||||||| ||||||| ||||||    
T  7016544 gttttagtccctctaaaaattttcttcaacttttagtcccta 7016585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 14395352 - 14395397
Alignment:
Q  236 ttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    |||||||||||||||||| ||||||| |||||||  ||||||||||    
T  14395352 ttttagtccctctaaaaattttcttcaacttttagcccctaaaaaa 14395397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 7227040 - 7227004
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccactttta 269  Q
    |||||||||||| |||||||||||||||| |||||||    
T  7227040 ttgttttagtccttctaaaaaatttcttcaactttta 7227004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 9376184 - 9376136
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    ||||||||||||||||||||  || |||| |||||||||||||| ||||    
T  9376184 ttgttttagtccctctaaaattttccttcaacttttattccctataaaa 9376136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 357
Target Start/End: Original strand, 13415115 - 13415191
Alignment:
Q  281 agttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaattttatg 357  Q
    ||||||||| |||||||| ||  |||||||| | ||||   ||||||| ||||| ||||||||||| ||||||||||    
T  13415115 agttgtctttgagtccgattcttctactctagtgcaaggtatatcgtccccgggccatggtgattctgaattttatg 13415191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 15898427 - 15898379
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    ||||||||||| ||||||||||||||||| | ||||| || ||||||||    
T  15898427 ttgttttagtctctctaaaaaatttcttcaatttttagtctctaaaaaa 15898379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 18558457 - 18558409
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    ||||||||||||||||||||||| ||||  ||||||| |||||| ||||    
T  18558457 ttgttttagtccctctaaaaaatatctttaacttttagtccctataaaa 18558409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 261
Target Start/End: Original strand, 32719775 - 32719803
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttc 261  Q
    |||||||||||||||||||||||||||||    
T  32719775 ttgttttagtccctctaaaaaatttcttc 32719803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 282 - 357
Target Start/End: Complemental strand, 15053269 - 15053194
Alignment:
Q  282 gttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaattttatg 357  Q
    |||||||||||||||||||| ||||||||| | |||  | |||||||| |||| ||||||||||||||||| ||||    
T  15053269 gttgtcttcgagtccgactcagctactctagtgcaaacgctatcgtcttcgggccatggtgattcggaattctatg 15053194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 380
Target Start/End: Original strand, 28107232 - 28107326
Alignment:
Q  282 gttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaattttatgatatatattgtttctagtattat 380  Q
    ||||||||||||||  |||||||||||||| | ||||   ||||||||||||| ||||||||||| ||||| ||||     ||||||||||||||||||    
T  28107232 gttgtcttcgagtctaactccgctactctagtgcaagctctatcgtctccgggccatggtgattcagaattctatg----ttattgtttctagtattat 28107326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 280
Target Start/End: Original strand, 21215351 - 21215398
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccacttttattccctaaaaa 280  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||||||||    
T  21215351 ttgttttagtccctctaaaaattttcttcaacttttagtccctaaaaa 21215398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 9373426 - 9373380
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    |||||| |||||||||||||||||||| ||||||| |||||||||||    
T  9373426 gttttaatccctctaaaaaatttcttcaacttttagtccctaaaaaa 9373380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 1092157 - 1092201
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccctaaaa 279  Q
    |||||||||||| |||||||||||||| ||||||| |||| ||||    
T  1092157 gttttagtccctttaaaaaatttcttcgacttttagtcccaaaaa 1092201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 346
Target Start/End: Complemental strand, 15606088 - 15606024
Alignment:
Q  282 gttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattc 346  Q
    ||||||||| |||||||||| ||||||||| | ||||   |||||||||  ||||||||||||||    
T  15606088 gttgtcttcaagtccgactcagctactctagtgcaagctctatcgtctctaggtcatggtgattc 15606024  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 16464827 - 16464867
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccct 275  Q
    ||||||||||||||||||| ||||||| ||||||| |||||    
T  16464827 gttttagtccctctaaaaattttcttcaacttttagtccct 16464867  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 357
Target Start/End: Complemental strand, 19690974 - 19690898
Alignment:
Q  281 agttgtcttcgagtccgactccgctactctactacaagtgttatcgtctccgggtcatggtgattcggaattttatg 357  Q
    ||||||||||||||| ||||| |||||| || | ||||   ||||||||| | |||||||||||| |||||| ||||    
T  19690974 agttgtcttcgagtctgactcagctactttagtgcaagctctatcgtctctgagtcatggtgatttggaattctatg 19690898  T

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Target: scaffold0111 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 40394 - 40440
Alignment:
Q  235 gttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    ||||||||||||||||||||||||||| ||||||| ||||| |||||    
T  40394 gttttagtccctctaaaaaatttcttcaacttttagtcccttaaaaa 40440  T

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Target: scaffold0121 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 3043 - 2995
Alignment:
Q  233 ttgttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    |||||||| |||||||||||||||||||| ||||||| |||||| ||||    
T  3043 ttgttttaatccctctaaaaaatttcttcaacttttagtccctataaaa 2995  T

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Target: scaffold0683 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0683
Description:

Target: scaffold0683; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 3254 - 3299
Alignment:
Q  236 ttttagtccctctaaaaaatttcttccacttttattccctaaaaaa 281  Q
    |||||||||||||||||| ||||||| ||||||| |||||| ||||    
T  3254 ttttagtccctctaaaaattttcttcaacttttagtccctataaaa 3299  T

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