View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3823_high_13 (Length: 300)
Name: NF3823_high_13
Description: NF3823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3823_high_13 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 7e-92; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 6014283 - 6014069
Alignment:
| Q |
18 |
ggatttaattttttgaaagaaatagaaacaacccaaaagattcatttccggactcacaaaggacggattaactgttaggatctttaagctttggaggcaa |
117 |
Q |
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| T |
6014283 |
ggatttaattttttgaaagaaatagaaacaagccaatagattcatttccagtctcacaaaggacggaataactgtcaggatctttaagctttggaggcaa |
6014184 |
T |
|
| Q |
118 |
tttgttttcaattatagcgctacatttttcttcaactttctgttcttcatttaatattagatattaaatttaaaaacaatgagaatagatt-gcaaacaa |
216 |
Q |
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|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6014183 |
tttgttttcaattatagcgctatatttttcttcaactttaggttcttcatttaatattagatattaaatttaaaaacaatgagaatagattagcaaacaa |
6014084 |
T |
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| Q |
217 |
tttcatagaaaatag |
231 |
Q |
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||||||||||||||| |
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| T |
6014083 |
tttcatagaaaatag |
6014069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 6018480 - 6018268
Alignment:
| Q |
20 |
atttaattttttgaaagaaatagaaacaacccaaaagattcatttccggactcacaaaggacggattaactgttaggatctttaagctttggaggcaatt |
119 |
Q |
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| T |
6018480 |
atttaattttttgaaagaaatagaaacaaaccaatagattcatttccagtctcacaaaggacagaataactgtcaggaactttaagctttggaggcaatt |
6018381 |
T |
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| Q |
120 |
tgttttcaattatagcgctacatttttcttcaactttctgttcttcatttaatattagatattaaatttaaaaacaatgagaatagatt-gcaaacaatt |
218 |
Q |
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| T |
6018380 |
tgttttcaattatatagctacattttgcttcaactttaggttcttcatttaatattagatattaaatttaaaaacaatgagaatagattagcaaacaatt |
6018281 |
T |
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| Q |
219 |
tcatagaaaatag |
231 |
Q |
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| T |
6018280 |
tcatagaaaatag |
6018268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 26 - 231
Target Start/End: Complemental strand, 6020616 - 6020410
Alignment:
| Q |
26 |
ttttttgaaagaaatagaaacaacccaaaagattcatttccggactcacaaaggacggattaactgttaggatctttaagctttggaggcaatttgtttt |
125 |
Q |
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| T |
6020616 |
ttttttgaaagaaatagaaacaaatcaatagtttcatttccaatctcacaatggacggaaaaactgtcaaaatctttaagctttggaggcaatttatttt |
6020517 |
T |
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| Q |
126 |
caattatagcgctacatttttcttcaactttctgttcttcatttaatattagatattaaatttaaaaacaatgagaatagatt-gcaaacaatttcatag |
224 |
Q |
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| T |
6020516 |
gaattatagctatacattttgcttcacctttaggttcttcacttaatattagatattaaatttaaatacgttgagaataaattagcaaacaatttcatag |
6020417 |
T |
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| Q |
225 |
aaaatag |
231 |
Q |
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||||||| |
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| T |
6020416 |
aaaatag |
6020410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 231 - 290
Target Start/End: Complemental strand, 6012655 - 6012596
Alignment:
| Q |
231 |
gtcgtctatactactttttcccatctcctattcggttaatggataatatatcttcctatg |
290 |
Q |
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| T |
6012655 |
gtcgtctatactactttttcccatctcctattcggttaatggataatatatcttcctatg |
6012596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 231 - 286
Target Start/End: Complemental strand, 6016982 - 6016927
Alignment:
| Q |
231 |
gtcgtctatactactttttcccatctcctattcggttaatggataatatatcttcc |
286 |
Q |
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| T |
6016982 |
gtcgtctatactactttctcccatctcctattcggttaatgaataatagatcttcc |
6016927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 23395057 - 23394987
Alignment:
| Q |
154 |
tttctgttcttcatttaatattagatattaaatttaaaaacaatgagaatagatt-gcaaacaatttcata |
223 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||| ||||||||||||| | ||||||||||||| |
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| T |
23395057 |
tttcggttcttcatttaatattagatatcaaatttaaaaacgatgagaatagattagaaaacaatttcata |
23394987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 27933358 - 27933294
Alignment:
| Q |
168 |
ttaatattagatattaaatttaaaaacaatgagaatagatt-gcaaacaatttcatagaaaatag |
231 |
Q |
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| T |
27933358 |
ttaatattatatatcaaatttaaagacaatgagaatagattagaaaacaatttcatataaaatag |
27933294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 356710 - 356776
Alignment:
| Q |
166 |
atttaatattagatattaaatttaaaaacaatgagaatagatt-gcaaacaatttcatagaaaatag |
231 |
Q |
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|||||||||||||||| ||||||||| || ||||||||||||| | || |||||||||| ||||||| |
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| T |
356710 |
atttaatattagatatcaaatttaaagacgatgagaatagattagaaagcaatttcatataaaatag |
356776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 12788885 - 12788820
Alignment:
| Q |
167 |
tttaatattagatattaaatttaaaaacaatgagaatagat-tgcaaacaatttcatagaaaatag |
231 |
Q |
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||||||||||||||| ||||||||| ||||||||| ||||| | ||||||||||||| ||||||| |
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| T |
12788885 |
tttaatattagatatcaaatttaaagacaatgagagtagataagaaaacaatttcatataaaatag |
12788820 |
T |
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