View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3823_high_14 (Length: 293)

Name: NF3823_high_14
Description: NF3823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3823_high_14
NF3823_high_14
[»] chr2 (1 HSPs)
chr2 (13-293)||(19951166-19951448)


Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 293
Target Start/End: Complemental strand, 19951448 - 19951166
Alignment:
Q  13 gagagtgtaaagttcattttaaaattcctgcttagcaaggcccaagaaaaattacatttgttgcaccagtcgtgattttcaatcaatctatccacctcta 112  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19951448 gagagtgtaaaattcattttaaaattcctgcttagcaaggcccaagaaaagttacatttgttgcaccagtcgtgattttcaatcaatctatccacctcta 19951349  T
Q  113 taatttcacgtggagcatggagaacgcaaccatccnnnnnnngataatcttgtcattggatgaaaaattagagt--ggacattatccaacttgtatggac 210  Q
    |||||||||||||||||||||||||||||||||||       | |||||||||||||||||||||||| | |||   |||||||||||||||||||||||    
T  19951348 taatttcacgtggagcatggagaacgcaaccatccaaaaaaagctaatcttgtcattggatgaaaaatcaaagtaaagacattatccaacttgtatggac 19951249  T
Q  211 ccttgtacactcatcaagagacttcaaatatcaaagatttttgttctgaaaatgtatggcaaataatactccgatagtgatat 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19951248 ccttgtacactcatcaagagacttcaaatatcaaagatttttgttctgaaaatgtatggcaaataatactccgatagtgatat 19951166  T

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