View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3823_high_17 (Length: 247)
Name: NF3823_high_17
Description: NF3823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3823_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 10193623 - 10193863
Alignment:
| Q |
1 |
gtccttggcaaggaagagaacaaagtccactaccatcagtttcaacagaggagcggaaatacaatctaagcgagcaagattctgaatctcatattactct |
100 |
Q |
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| T |
10193623 |
gtccttggcaaggaagagaacaaagtccactaccatcagtttcaacagaggagcggaaatacaatctaagcgagcaagattctgaatctcatattactct |
10193722 |
T |
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| Q |
101 |
ccacaagtgcagcagagcttttaacccactgggagcagcttccctcatgtaaaggggaaagctttcgtaaaaaacaattctcccttttgaggacaagacg |
200 |
Q |
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| T |
10193723 |
ccacaagtgcagcagagcttttaacccactgggagcagcttccctcatgtaaaggagaaagctttcgtaaaaaacaattctcccttttgagaacaagacg |
10193822 |
T |
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| Q |
201 |
aaatgtttcaggggaaattgacagtagtaggcctttgattc |
241 |
Q |
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| T |
10193823 |
aaatgtttcaggggaaattgacagtagtaggcctttgattc |
10193863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 73 - 241
Target Start/End: Complemental strand, 19459535 - 19459368
Alignment:
| Q |
73 |
agcaagattctgaatctcatattactctccacaagtgcagcagagcttttaacccactgggagcagcttccctcatgtaaaggggaaagctttcgtaaaa |
172 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||||||||| ||| |||||||| |||||||||||||||||||| |||||||| | | ||| |
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| T |
19459535 |
agcaagattctgaatctcatattacgccccacaagtgcagcagagctttcaacgcactgggaacagcttccctcatgtaaaggtgaaagcttccatcaaa |
19459436 |
T |
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| Q |
173 |
aacaattctcccttttgaggacaagacgaaatgtttcaggggaaattgacagtagtaggcctttgattc |
241 |
Q |
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| T |
19459435 |
agcaattttcccttttgaggacaa-acgaaagatttcaggggaaattgacagtagtaagcctttgattc |
19459368 |
T |
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