View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3823_high_18 (Length: 245)
Name: NF3823_high_18
Description: NF3823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3823_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 12514520 - 12514310
Alignment:
| Q |
19 |
aaaaacactactcttcaaattataggcatatactccttaaaagtacaattttaaagnnnnnnntcagaacaaagaactgtctgtccaatacacggaacaa |
118 |
Q |
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| T |
12514520 |
aaaaacactactcttcaaattataggcatatactccttaaaagtataattttaaagaaaaaaatcagaacaaagaactgtctgttcaatgcacggaacaa |
12514421 |
T |
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| Q |
119 |
ttatatttttgcagtaataataatactcaaaatatataatgatgttcagataaaaatgcatcatccactaccatcacaatatttacatgaagcttgaata |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12514420 |
ttatatttttgcagtaataataatactcaaaatatataatgatgttcagataaaaatgcatcatccactaccgtcacaatatttacatgaagcttgaata |
12514321 |
T |
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| Q |
219 |
tatgacctatg |
229 |
Q |
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||||||||||| |
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| T |
12514320 |
tatgacctatg |
12514310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 82 - 224
Target Start/End: Complemental strand, 32283777 - 32283635
Alignment:
| Q |
82 |
tcagaacaaagaactgtctgtccaatacacggaacaattatatttttgcagtaataataatactcaaaatatataatgatgttcagataaaaatgcatca |
181 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32283777 |
tcagaacaaagaactgtctgtccaatgcacagaacaattatatttttgcagtaataataatactcaaaatatataatgatgttcagataaaaatgcatca |
32283678 |
T |
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| Q |
182 |
tccactaccatcacaatatttacatgaagcttgaatatatgac |
224 |
Q |
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| T |
32283677 |
tccactaccgtcacaatagttacatgaagcttgaatatatgac |
32283635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 32283954 - 32283899
Alignment:
| Q |
19 |
aaaaacactactcttcaaattataggcatatactccttaaaagtacaattttaaag |
74 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32283954 |
aaaaacactactcttcaaattataggcatatactccttaaaagtacaattttaaag |
32283899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 82 - 224
Target Start/End: Complemental strand, 15703012 - 15702870
Alignment:
| Q |
82 |
tcagaacaaagaactgtctgtccaatacacggaacaattatatttttgcagtaataataatactcaaaatatataatgatgttcagataaaaatgcatca |
181 |
Q |
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|
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15703012 |
tcagaacaaagaactgtctgtccaatgcacagaacaattatatttttgcagtaataataatactcaaaatatataatgatgttcagataaaaatgcatca |
15702913 |
T |
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| Q |
182 |
tccactaccatcacaatatttacatgaagcttgaatatatgac |
224 |
Q |
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||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
15702912 |
tccactaccgtcacaatagttacatgaagcttgaatatatgac |
15702870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 15703189 - 15703134
Alignment:
| Q |
19 |
aaaaacactactcttcaaattataggcatatactccttaaaagtacaattttaaag |
74 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15703189 |
aaaaacactactcttcaaattataggcatatactccttaaaagtacaattttaaag |
15703134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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