View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3823_high_4 (Length: 557)
Name: NF3823_high_4
Description: NF3823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3823_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 14 - 237
Target Start/End: Original strand, 45698158 - 45698381
Alignment:
| Q |
14 |
aacctgtgcaattagaaaaggaaaagaaattaacagacattctcatcaaatcatacaatgtatctgcttatatagagtcctagaggatacatacgagttg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
45698158 |
aacctgtgcaattagaaaaggaaaagaaattaacagacattctcatcaaatcatacaatgtatatgcttaaatagagtcctagaggatacatacgagttg |
45698257 |
T |
|
| Q |
114 |
aacaatgatgaaaatgaatgcatgatctctggcaacaagaaactgaaatttcaatctcaaccaccaacgatctttagggacatttggtcgaattatgaag |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45698258 |
aacaatgatgaaaatgaatgcatgatctctggcaacaagaaactgaaatttcaatctcaaccaccaacgatctttagggacatttggtcgaattatgaag |
45698357 |
T |
|
| Q |
214 |
agagctctgcattcagtacagtga |
237 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
45698358 |
agagctctgcattcagtacagtga |
45698381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 324 - 542
Target Start/End: Original strand, 45698493 - 45698711
Alignment:
| Q |
324 |
ttaccttggtagacctccaattatcgagacatgatctgtggacatacttttgggtacctttgcaatggcagggggcaattaagtcttctcctccaagatc |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45698493 |
ttaccttggtagacctccaattatcgagacatgatctgtggacatacttttgggtacctttgcaatggcagggggcaattaagtcttctcctccaagatc |
45698592 |
T |
|
| Q |
424 |
aaggcatatccggcattgtgggtgatcagcatttacaacaagaagacgagaagactcattgtcgtagtcatcgtcttcgtcgttggcaggaataggaata |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45698593 |
aaggcatatccggcattgtgggtgatcagcatttacaacaagaagatgagaagactcattgtcgtagtcatcgtcttcgtcgttggcaggaataggaata |
45698692 |
T |
|
| Q |
524 |
atttcacagaggtgattct |
542 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
45698693 |
atttcacagaggtgattct |
45698711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University