View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3823_high_9 (Length: 405)
Name: NF3823_high_9
Description: NF3823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3823_high_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 6 - 388
Target Start/End: Original strand, 26463506 - 26463887
Alignment:
| Q |
6 |
caccaccaccaaactcaataacaccatttttagcttcaagagaatcaggttcaaaataaaaaacctttagaaacacactcatggcttcttctctcattcc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26463506 |
caccaccaccaaactcaataacaccattcttagcttcaagagaatcatgttcaaaatcaaaaacctttagaaacatactcatggcttcttctctcattcc |
26463605 |
T |
|
| Q |
106 |
cttccattcataacactttcaatgaatcaaaattaagacaaaactttcaataaatcaatgaaccacaattgactataacatcttgtgtgcgttgtttttg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26463606 |
cttccattcataacactttcaatgaatcaaaattaagacaaaactttcaataaatcaatgaaccgcaattgactataacatcttgtgtgcgttgtttttg |
26463705 |
T |
|
| Q |
206 |
ttgttcttgtcgacggcgaaggtacgatggcgaaggtatgtacaagtatcaactagcaacacatgaaaacttgaattacatttcttagcagacagaaacc |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26463706 |
ttgttcttgtcgacggcgaaggtacgatggcgaaggtatgtacaagtatcaactagcaacacatgaaaacttgaattacatttcttagcagacagaaacc |
26463805 |
T |
|
| Q |
306 |
atgttgtaatggtttgataacatgtgttaattcaagagacattgacatccttgttgtaaaattgtagtttgtataacccaact |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26463806 |
atgttgtaatggtttgataacatgtgttaattcaagagacattgacatccttgttgt-aaattgtagtttgtataacccaact |
26463887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 6 - 207
Target Start/End: Original strand, 31197387 - 31197591
Alignment:
| Q |
6 |
caccaccaccaaactcaataacaccatttttagcttcaagagaatcag---gttcaaaataaaaaacctttagaaacacactcatggcttcttctctcat |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31197387 |
caccaccaccaaactcaataacaccatttttagctttaagagaatcagcaggttcaaaatcaaaaacctttagaaacacactcatggcttcttctctcat |
31197486 |
T |
|
| Q |
103 |
tcccttccattcataacactttcaatgaatcaaaattaagacaaaactttcaataaatcaatgaaccacaattgactataacatcttgtgtgcgttgttt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31197487 |
tcccttccattcataacactttcaatgaatcaaaattaagacaaaactttcaatgaatcaatgaaccgcaattgactataacatcttgtgtgcgttgttt |
31197586 |
T |
|
| Q |
203 |
ttgtt |
207 |
Q |
| |
|
||||| |
|
|
| T |
31197587 |
ttgtt |
31197591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 241 - 324
Target Start/End: Original strand, 48062831 - 48062917
Alignment:
| Q |
241 |
gtatgtacaagtatcaactagcaacacatgaaaacttgaat---tacatttcttagcagacagaaaccatgttgtaatggtttgata |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| | ||||||||||| |
|
|
| T |
48062831 |
gtatgtacaagtatcaactagcaacacatgaaaacttgaatctgtacatttcttagcagacagaagccatgtcatcatggtttgata |
48062917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 55866928 - 55866966
Alignment:
| Q |
187 |
cttgtgtgcgttgtttttgttgttcttgtcgacggcgaa |
225 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
55866928 |
cttgtgtgcgttgattttgttgttcttgtcgactgcgaa |
55866966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 28537179 - 28537093
Alignment:
| Q |
37 |
agcttcaagagaatcaggttcaaaataaaaaacctttagaaacacactcatggcttcttctctcattcccttccattcataacactt |
123 |
Q |
| |
|
|||||||| ||||||||||||||||| | |||||| |||||||| || | |||||||||||||| || ||||||||||||||||| |
|
|
| T |
28537179 |
agcttcaacagaatcaggttcaaaatccagaaccttctgaaacacattcttcgcttcttctctcatccctttccattcataacactt |
28537093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 324 - 388
Target Start/End: Complemental strand, 49041969 - 49041906
Alignment:
| Q |
324 |
aacatgtgttaattcaagagacattgacatccttgttgtaaaattgtagtttgtataacccaact |
388 |
Q |
| |
|
|||| |||||||| |||||||||||||||| |||||||| |||||||||||||| |||||||||| |
|
|
| T |
49041969 |
aacaggtgttaatccaagagacattgacattcttgttgt-aaattgtagtttgtttaacccaact |
49041906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 29143844 - 29143806
Alignment:
| Q |
187 |
cttgtgtgcgttgtttttgttgttcttgtcgacggcgaa |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29143844 |
cttgtgtgcgttgtttttgttgttcttgtcgacggcgaa |
29143806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 215
Target Start/End: Original strand, 47558608 - 47558636
Alignment:
| Q |
187 |
cttgtgtgcgttgtttttgttgttcttgt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
47558608 |
cttgtgtgcgttgtttttgttgttcttgt |
47558636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University