View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3823_low_12 (Length: 354)

Name: NF3823_low_12
Description: NF3823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3823_low_12
NF3823_low_12
[»] chr6 (5 HSPs)
chr6 (11-336)||(12897776-12898101)
chr6 (11-314)||(12905419-12905723)
chr6 (13-314)||(12946874-12947175)
chr6 (13-314)||(12956311-12956612)
chr6 (48-324)||(12930499-12930775)
[»] chr2 (1 HSPs)
chr2 (13-316)||(17925081-17925384)
[»] chr5 (12 HSPs)
chr5 (117-230)||(10764876-10764989)
chr5 (119-319)||(10609938-10610138)
chr5 (207-324)||(10742571-10742688)
chr5 (121-170)||(10748798-10748847)
chr5 (270-314)||(10718830-10718874)
chr5 (207-254)||(10549086-10549133)
chr5 (262-308)||(11049796-11049842)
chr5 (46-88)||(10557379-10557421)
chr5 (116-170)||(10718676-10718730)
chr5 (46-151)||(10218434-10218539)
chr5 (190-303)||(10557164-10557277)
chr5 (46-87)||(10603213-10603254)


Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 11 - 336
Target Start/End: Complemental strand, 12898101 - 12897776
Alignment:
Q  11 cagagaattgatttcctccaaaatgtaaaaatttaagattggggagggtgtggaacatgttgggtggaaaagagccatgcaagttattttgtgttgccga 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12898101 cagagaattgatttcctccaaaatgtaaaaatttaagattggggagggtgtggaacatgttgggtggaaaagagccatgcaagttattttgtgttgccga 12898002  T
Q  111 aagtgtaataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttgacactcaaacctaaatatgtcaagtgtttgaggaaacat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12898001 aagtgtaataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttgacactcaaacctaaatatgtcaagtgtttgaggaaacat 12897902  T
Q  211 atttcttgtggaatatctccctcaaaattgttttcagaaactgacagacgtgttaagcttgaaagatttccaatgaatgaagggattcctccggttaaat 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12897901 atttcttgtggaatatctccctcaaaattgttttcagaaactgacagacgtgttaagcttgaaagatttccaatgaatgaagggattcctccggttaaat 12897802  T
Q  311 tgttattccgaacaaacattgattga 336  Q
    ||||||||||||||||||||||||||    
T  12897801 tgttattccgaacaaacattgattga 12897776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 11 - 314
Target Start/End: Complemental strand, 12905723 - 12905419
Alignment:
Q  11 cagagaattgatttcctccaaaatgtaaaaatttaagattggggagggtgtggaacatgttgggtggaaaagagccatgcaagttattttgtgttgccga 110  Q
    ||||||||||||||  | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    |||     
T  12905723 cagagaattgatttgatgcaaaatgtaataatttaagattggggagggtgtggaacatgttgggtggaaaagagccatgcaagttattttcttccaccgc 12905624  T
Q  111 aagtgtaataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttga-cactcaaacctaaatatgtcaagtgtttgaggaaaca 209  Q
    ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||   ||| |||| ||||| ||||||||||||||||||||||    
T  12905623 aagggtaataagtgatgagatattataaagacaagaaggtatcttaccggacaaattgtttctcacccaaagctaaaaatgtcaagtgtttgaggaaaca 12905524  T
Q  210 tatttcttgtggaatatctccctcaaaattgttttcagaaactgacagacgtgttaagcttgaaagatttccaatgaatgaagggattcctccggttaaa 309  Q
    |||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||| |||||| ||||||||||||||||| ||||||||     
T  12905523 tatttcttgtggaatatctccctcaaaattgttaccagaaactgatagacgtgttaagcttgaaatatttcctatgaatgaagggattccaccggttaac 12905424  T
Q  310 ttgtt 314  Q
    |||||    
T  12905423 ttgtt 12905419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 314
Target Start/End: Complemental strand, 12947175 - 12946874
Alignment:
Q  13 gagaattgatttcctccaaaatgtaaaaatttaagattggggagggtgtggaacatgttgggtggaaaagagccatgcaagttattttgtgttgccgaaa 112  Q
    |||||||||||| |||||||||  || | || |||||||||||||||||||||||||||||||| |||||||||||| | || |||  ||||| ||||||    
T  12947175 gagaattgatttgctccaaaatagaatagttcaagattggggagggtgtggaacatgttgggtgcaaaagagccatgaaggtgattcagtgttaccgaaa 12947076  T
Q  113 gtgtaataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttgacactcaaacctaaatatgtcaagtgtttgaggaaacatat 212  Q
    |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||| ||||| |||||||||||||||| ||||||||    
T  12947075 ggacaataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttctcattcaaagctaaaaatgtcaagtgtttgagaaaacatat 12946976  T
Q  213 ttcttgtggaatatctccctcaaaattgttttcagaaactgacagacgtgttaagcttgaaagatttccaatgaatgaagggattcctccggttaaattg 312  Q
    |||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12946975 ttcttgtggaatgtctccctcaaaattgttttcagaaactaatagacgtgttaagcttgaaagatttccaatgaatgaagggattcctccgattaaattg 12946876  T
Q  313 tt 314  Q
    ||    
T  12946875 tt 12946874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 314
Target Start/End: Complemental strand, 12956612 - 12956311
Alignment:
Q  13 gagaattgatttcctccaaaatgtaaaaatttaagattggggagggtgtggaacatgttgggtggaaaagagccatgcaagttattttgtgttgccgaaa 112  Q
    |||||||||||| || ||||||  || | || ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||| ||    
T  12956612 gagaattgatttgctgcaaaatcgaatatttgaagattggggagggtgtggaacatgttgggtggaaaagagccatgaaggttattttgtgttaccgcaa 12956513  T
Q  113 gtgtaataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttgacactcaaacctaaatatgtcaagtgtttgaggaaacatat 212  Q
    | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||| ||||| ||||||||||||||  | |||||||    
T  12956512 gggcaataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttctcacccaaagctaaaaatgtcaagtgtttgcagcaacatat 12956413  T
Q  213 ttcttgtggaatatctccctcaaaattgttttcagaaactgacagacgtgttaagcttgaaagatttccaatgaatgaagggattcctccggttaaattg 312  Q
    ||||||||||||||||||||||||||||||   |||| |||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||    
T  12956412 ttcttgtggaatatctccctcaaaattgttacgagaagctgatagacgtgttaagcttgaaagatttcctatgaatgaagggattccaccagttaacttg 12956313  T
Q  313 tt 314  Q
    ||    
T  12956312 tt 12956311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 48 - 324
Target Start/End: Complemental strand, 12930775 - 12930499
Alignment:
Q  48 attggggagggtgtggaacatgttgggtggaaaagagccatgcaagttattttgtgttgccgaaagtgtaataagtgatgagatattataaagacaagaa 147  Q
    |||||||||||||||||||||||||||||||||||||||||| | || ||| |||||| ||| ||| | |||||||||||||||||||||||||||||||    
T  12930775 attggggagggtgtggaacatgttgggtggaaaagagccatgaaggtgattctgtgttaccgtaagggaaataagtgatgagatattataaagacaagaa 12930676  T
Q  148 ggaatcttaccggacaaattgttgacactcaaacctaaatatgtcaagtgtttgaggaaacatatttcttgtggaatatctccctcaaaattgttttcag 247  Q
    |||||||||||||||||||||||  |||||| |||||||  |||||||||||||||||||||||||||||||||||| |  ||    |||||||| |||     
T  12930675 ggaatcttaccggacaaattgttctcactcacacctaaaattgtcaagtgtttgaggaaacatatttcttgtggaatcttaccggagaaattgttctcac 12930576  T
Q  248 aaactgacagacgtgttaagcttgaaagatttccaatgaatgaagggattcctccggttaaattgttattccgaaca 324  Q
      |     ||||||||||||| |||||||||||| || ||||||||||||||| ||||||||| |||||||| ||||    
T  12930575 ccaaatttagacgtgttaagcatgaaagatttcctataaatgaagggattccttcggttaaatggttattcccaaca 12930499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 13 - 316
Target Start/End: Original strand, 17925081 - 17925384
Alignment:
Q  13 gagaattgatttcctccaaaatgtaaaaatttaagattggggagggtgtggaacatgttgggtggaaaagagccatgcaagttattttgtgttgccgaaa 112  Q
    ||||||||||||||| ||||||  || | |||||||||||||||||||||||| ||||||||||||||||||||  | ||||||||||||    ||| ||    
T  17925081 gagaattgatttcctgcaaaatcaaatattttaagattggggagggtgtggaagatgttgggtggaaaagagccgagaaagttattttgttccaccgcaa 17925180  T
Q  113 gtgtaataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttgacactcaaacctaaatatgtcaagtgtttgaggaaacatat 212  Q
    | | ||||||||||||||| |||||||||||||| |||||||||||||| ||||||||  ||| |||| ||||| |||||||||||||| || |||||||    
T  17925181 gggaaataagtgatgagatgttataaagacaagatggaatcttaccggaaaaattgttctcacccaaagctaaaaatgtcaagtgtttgcggcaacatat 17925280  T
Q  213 ttcttgtggaatatctccctcaaaattgttttcagaaactgacagacgtgttaagcttgaaagatttccaatgaatgaagggattcctccggttaaattg 312  Q
    ||||||||||||||||||||||||||||||   || | |||| ||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||    
T  17925281 ttcttgtggaatatctccctcaaaattgttaagagcagctgatagacgtgttaagcatgaaagatttcctatgaatgaagggattcctccagttaaattg 17925380  T
Q  313 ttat 316  Q
    ||||    
T  17925381 ttat 17925384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 117 - 230
Target Start/End: Original strand, 10764876 - 10764989
Alignment:
Q  117 aataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttgacactcaaacctaaatatgtcaagtgtttgaggaaacatatttct 216  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||  | |  |||  |||| ||||||||| |||||||  ||||||||||    
T  10764876 aataagtgatgagatattataaagacaagatggaatcttaccagacaaattgttctcgccaaaagataaaaatgtcaagtttttgaggcgacatatttct 10764975  T
Q  217 tgtggaatatctcc 230  Q
    ||||||||||||||    
T  10764976 tgtggaatatctcc 10764989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 119 - 319
Target Start/End: Complemental strand, 10610138 - 10609938
Alignment:
Q  119 taagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttgacactcaaacctaaatatgtcaagtgtttgaggaaacatatttcttg 218  Q
    |||||| ||||||||| |||||||||||||||||| |||| ||||||| ||| |||| || |  ||||  | |||| | ||||||   |||| |||||||    
T  10610138 taagtgctgagatattgtaaagacaagaaggaatcataccagacaaatagtttacacccataaataaacctctcaaatttttgagacgacatgtttcttg 10610039  T
Q  219 tggaatatctccctcaaaattgttttcagaaactgacagacgtgttaagcttgaaagatttccaatgaatgaagggattcctccggttaaattgttattc 318  Q
    ||||||||| || || || ||||||  || |||||| | ||| ||||||| ||||||||| || | ||||||||| |||||||||||||| ||||| |||    
T  10610038 tggaatatccccttctaagttgtttgaagtaactgaaaaacgcgttaagcatgaaagattccctacgaatgaaggaattcctccggttaatttgtttttc 10609939  T
Q  319 c 319  Q
    |    
T  10609938 c 10609938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 324
Target Start/End: Original strand, 10742571 - 10742688
Alignment:
Q  207 acatatttcttgtggaatatctccctcaaaattgttttcagaaactgacagacgtgttaagcttgaaagatttccaatgaatgaagggattcctccggtt 306  Q
    ||||||||||||||||||||| || || || ||||||  || ||| || | | |  |||| ||||||||||| || ||| |||||| ||||||||| |||    
T  10742571 acatatttcttgtggaatatccccttctaagttgtttgaaggaaccgaaaaaagcattaaacttgaaagattccctatggatgaagagattcctccagtt 10742670  T
Q  307 aaattgttattccgaaca 324  Q
    ||||||||||||| ||||    
T  10742671 aaattgttattccaaaca 10742688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 170
Target Start/End: Original strand, 10748798 - 10748847
Alignment:
Q  121 agtgatgagatattataaagacaagaaggaatcttaccggacaaattgtt 170  Q
    ||||||||||||||||||||||||||||||| | |||| |||||||||||    
T  10748798 agtgatgagatattataaagacaagaaggaaacataccagacaaattgtt 10748847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 10718830 - 10718874
Alignment:
Q  270 tgaaagatttccaatgaatgaagggattcctccggttaaattgtt 314  Q
    |||||||||||| |||||||||||||||||||| |||||||||||    
T  10718830 tgaaagatttcccatgaatgaagggattcctccagttaaattgtt 10718874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 254
Target Start/End: Complemental strand, 10549133 - 10549086
Alignment:
Q  207 acatatttcttgtggaatatctccctcaaaattgttttcagaaactga 254  Q
    ||||||||||||||||||||||||||| |||||||| | |||||||||    
T  10549133 acatatttcttgtggaatatctccctccaaattgttataagaaactga 10549086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 308
Target Start/End: Original strand, 11049796 - 11049842
Alignment:
Q  262 gttaagcttgaaagatttccaatgaatgaagggattcctccggttaa 308  Q
    ||||||||||||||||| || |||||||||||||||||||| |||||    
T  11049796 gttaagcttgaaagattccctatgaatgaagggattcctccagttaa 11049842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 10557421 - 10557379
Alignment:
Q  46 agattggggagggtgtggaacatgttgggtggaaaagagccat 88  Q
    ||||||||||||| || ||||||||||||||||| ||||||||    
T  10557421 agattggggagggagttgaacatgttgggtggaagagagccat 10557379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 10718676 - 10718730
Alignment:
Q  116 taataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgtt 170  Q
    |||| |||||||||||||| |||| ||||||||||||  |||| |||||||||||    
T  10718676 taatgagtgatgagatattgtaaaaacaagaaggaattataccagacaaattgtt 10718730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 151
Target Start/End: Original strand, 10218434 - 10218539
Alignment:
Q  46 agattggggagggtgtggaacatgttgggtggaaaagagccatgcaagttattttgtgttgccgaaagtgtaataagtgatgagatattataaagacaag 145  Q
    |||||||||||||  || |||||||||||||||| ||||||||  ||||||||   ||||   |  ||   |||||||||||||||||| |||| |||||    
T  10218434 agattggggagggcatgaaacatgttgggtggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaag 10218533  T
Q  146 aaggaa 151  Q
    ||||||    
T  10218534 aaggaa 10218539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 303
Target Start/End: Complemental strand, 10557277 - 10557164
Alignment:
Q  190 gtcaagtgtttgaggaaacatatttcttgtggaatatctccctcaaaattgttttcagaaactgacagacgtgttaagcttgaaagatttccaatgaatg 289  Q
    ||||||||||| |||  |||||||||||| |||||||||||||| || |||||   |||||  || |||  |||||||  ||||||||| || |||||||    
T  10557277 gtcaagtgttttaggcgacatatttcttggggaatatctccctctaagttgttacgagaaatggaaagagttgttaagactgaaagattacctatgaatg 10557178  T
Q  290 aagggattcctccg 303  Q
      |||| |||||||    
T  10557177 gtgggactcctccg 10557164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 10603254 - 10603213
Alignment:
Q  46 agattggggagggtgtggaacatgttgggtggaaaagagcca 87  Q
    ||||||||||| ||||||||||| |||||||||| |||||||    
T  10603254 agattggggagagtgtggaacatattgggtggaagagagcca 10603213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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