View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3823_low_16 (Length: 278)
Name: NF3823_low_16
Description: NF3823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3823_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 7131031 - 7130911
Alignment:
| Q |
1 |
ttgcatttgaagagtgaaaaccaaaatattttcaacccaagatcttagagggggcttttggatagccacaagaaaacactaatgatatatgggacaagat |
100 |
Q |
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| T |
7131031 |
ttgcatttgaagagtgaaaaccaaaatattttcaacccaagatcttagagggggcttttggatagccacaagaaaacactaatgttatatgggacaagat |
7130932 |
T |
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| Q |
101 |
gacacatgggattacaaaagt |
121 |
Q |
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| T |
7130931 |
gacacatgggattacaaaagt |
7130911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 123 - 231
Target Start/End: Original strand, 17083889 - 17083998
Alignment:
| Q |
123 |
gtggcgtttaatttggactcaccgaaaaattggtccaacttgaacccattaactt-aaaccattgatcaaataagatgtatagattttatgacagtcctt |
221 |
Q |
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|||||||||||||||||| || ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | |||||| | ||||| | |
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| T |
17083889 |
gtggcgtttaatttggacccattgaaaaattggtccaacttggacccattaacttaaaaccattgatcaaataagatgtacatattttacggtagtccat |
17083988 |
T |
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| Q |
222 |
ccacacatga |
231 |
Q |
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| T |
17083989 |
ccacacatga |
17083998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 128 - 212
Target Start/End: Original strand, 38701069 - 38701152
Alignment:
| Q |
128 |
gtttaatttggactcaccgaaaaattggtccaacttgaacccattaacttaaaccattgatcaaataagatgtatagattttatg |
212 |
Q |
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| T |
38701069 |
gtttaatttggac-cattgaaaaattggtctaacttgaaccaattaacttaaaccattgatcaaataggatgtatagattttatg |
38701152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 128 - 260
Target Start/End: Original strand, 54385236 - 54385367
Alignment:
| Q |
128 |
gtttaatttggactcaccgaaaaattggtccaacttgaacccattaacttaaaccattgatcaaataagatgtatagattttatgacagtccttccacac |
227 |
Q |
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||||||||||||| || ||||||||| ||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||| ||||| || ||| |
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| T |
54385236 |
gtttaatttggacccattgaaaaattgatccaacttggaccaattaacttagaccattgatcaaataagatgtatagattttatagtagtccatctgcac |
54385335 |
T |
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| Q |
228 |
atgattaaactctctcactcttccagcatctct |
260 |
Q |
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|||| | ||||||||||||||||| |||||| |
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| T |
54385336 |
atgagt-tgctctctcactcttccagtatctct |
54385367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 121
Target Start/End: Original strand, 9257291 - 9257408
Alignment:
| Q |
4 |
catttgaagagtgaaaaccaaaatattttc-aacccaagatcttagagggggcttttggatagccacaagaaaacactaatgatatatgggacaagatga |
102 |
Q |
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||||| ||| ||||||| |||| |||||| ||| |||||||||| |||||| |||| |||| ||||| | || |||||||||||| |||||||||||| |
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| T |
9257291 |
cattttaagggtgaaaaacaaaggattttccaacacaagatcttataggggg-ttttagataaccacatggaagcactaatgatatgtgggacaagatgg |
9257389 |
T |
|
| Q |
103 |
cacatgggattacaaaagt |
121 |
Q |
| |
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|||||| ||||| |||||| |
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|
| T |
9257390 |
cacatgagattaaaaaagt |
9257408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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