View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3823_low_19 (Length: 243)
Name: NF3823_low_19
Description: NF3823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3823_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 24 - 197
Target Start/End: Complemental strand, 39738975 - 39738802
Alignment:
| Q |
24 |
aggctaccttttctcacagttattatggaattgatcaactactgtcaaattaaactgtgcatatctactcaccatagggcaaactatctgaatctgcaac |
123 |
Q |
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| T |
39738975 |
aggctaccttttctcacagttattatggaattgatcaactactgtcaaattaaactgtgcatatctactcaccatagggtaaactatctgaatctgcaac |
39738876 |
T |
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| Q |
124 |
atccaaatacttggagaaatagtccacacacattgttcccatttaggaaaatcagtgcacgactgatcagagtg |
197 |
Q |
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| T |
39738875 |
atccaaatacttggagaaatagtccacacacattgttcccatttaggaaaatcagtgcacgactgatcagagtg |
39738802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 174
Target Start/End: Original strand, 39867872 - 39868004
Alignment:
| Q |
43 |
ttattatggaattgatcaactactgtcaaattaaactgtgcatatctactc--accatagggcaaactatctgaatctgcaacatccaaatacttggaga |
140 |
Q |
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| T |
39867872 |
ttattattgatttgattaactactgtcaagctaaactgtgcataactactccaaccattgggcaaattagctgaatcttgaacatccaaatacatggaca |
39867971 |
T |
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| Q |
141 |
aatagtccacacacattgttcccatttaggaaaa |
174 |
Q |
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| T |
39867972 |
aatggtcc-gacacattgttcccttttgggaaaa |
39868004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 37476605 - 37476683
Alignment:
| Q |
74 |
taaactgtgcatatctactc--accatagggcaaactatctgaatctgcaacatccaaatacttggagaaatagtccac |
150 |
Q |
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| T |
37476605 |
taaactgtgcatatctactccaaccgtagggcagactagttgaatctgcaacatccaaatacatggacaaatagtccac |
37476683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 43 - 151
Target Start/End: Complemental strand, 36050311 - 36050201
Alignment:
| Q |
43 |
ttattatggaattgatcaactactgtcaaattaaactgtgcatatctactc--accatagggcaaactatctgaatctgcaacatccaaatacttggaga |
140 |
Q |
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|||||||||| ||||| ||| | || |||| |||||||||||||||||||| |||||||||||||||| |||||| || |||||||||||| |||| | |
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| T |
36050311 |
ttattatggatttgattaacaattgccaaactaaactgtgcatatctactccaaccatagggcaaactagttgaatccgcgacatccaaatacatggaca |
36050212 |
T |
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| Q |
141 |
aatagtccaca |
151 |
Q |
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| T |
36050211 |
aatagtccaca |
36050201 |
T |
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