View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3823_low_2 (Length: 703)
Name: NF3823_low_2
Description: NF3823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3823_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 661; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 661; E-Value: 0
Query Start/End: Original strand, 16 - 696
Target Start/End: Original strand, 4116544 - 4117224
Alignment:
| Q |
16 |
aataatcttaccaaggttctaagtgaaatcgttttgagattaggatctatgtcgaagattgttccatatgtggttttatcaaggtcgtttcgcaatgaag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4116544 |
aataatcttaccaaggttctaagtgaaatcgttttgagattaggatctatgtcgaagattgttccatatgtggttttatcaaggtcatttcgcaatgaag |
4116643 |
T |
|
| Q |
116 |
acctgtaaaatgtacacaacttagtttcatgagcttatatactagaatttcctgcaatcaggaaaagcacacatgcgcgtattgaagggatgtcgaccat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4116644 |
acctgtaaaatgtacacaacttagtttcatgagcttatagactagaatttcctgcaatcaggaaaagcacacatgcgcgtattgaagtgatgtcgaccat |
4116743 |
T |
|
| Q |
216 |
tgcatgaagatccgacagtttttaaatacacatcttcaaatacaaacttccagatcgttatcaaatgatcgagattcataactacgtgacttccgaaaat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4116744 |
tgcatgaagatccgacagtttttaaatacacatcttcaaatacaaacttccagatcgttatcaaatgatcgagattcataactacgtgacttccgaaaat |
4116843 |
T |
|
| Q |
316 |
caaaatccctcgctatagtctataagtggttcaaactcaatctcattgaaaagtgaaatttatgcaatgcaaattaaattagagaatgttataaataacc |
415 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4116844 |
caaaatccctcgctatagtctataagaggttcaaactcaatctcattgaaaagtgaaatttatgcaatgcaaattaaattagagaatgttataaataacc |
4116943 |
T |
|
| Q |
416 |
tgctctggtcactgcacatcagacataaatatctatttgacgctctaaatatttggaaagacactgctgtttgctctgtcaaatcctttgaagctaaagc |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4116944 |
tgctctggtcactgcacatcagacataaatatctatttgacgctctaaatatttggaaagacactgctgtttcctctgtcaaatcctttgaagctaaagc |
4117043 |
T |
|
| Q |
516 |
taacaaaccaaacggtcctattttgccacttcttgatgcatgttgtttgctacatagtagttgaggatcaacttcactaggatcttctaaccagtcacca |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4117044 |
taacaaaccaaacggtcctattttgccacttcttgatgcatgttgtttgctacatagtagttgaggatcaacttcactaggatcttctaaccagtcacca |
4117143 |
T |
|
| Q |
616 |
ctttctagctcaggtagctcaaacaacacttctacatcaaccttaaagttcaaattggaaaatgattatcattgatgatgt |
696 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4117144 |
ctttctagctcaggtagctcaaacaacacttctacatcaaccttaaagttcaaattggaaaatgattatcattgatgatgt |
4117224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 24 - 150
Target Start/End: Original strand, 4136435 - 4136561
Alignment:
| Q |
24 |
taccaaggttctaagtgaaatcgttttgagattaggatctatgtcgaagattgttccatatgtggttttatcaaggtcgtttcgcaatgaagacctgtaa |
123 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||| ||||| ||||| ||||| ||| |||||| |||||| |||| ||| | |||||||||||||||||| |
|
|
| T |
4136435 |
taccaagcttctaagtgaaattgttttgagattgggatcaatgtcaaagatagttgcatatgaggttttttcaacgtcctcccgcaatgaagacctgtaa |
4136534 |
T |
|
| Q |
124 |
aatgtacacaacttagtttcatgagct |
150 |
Q |
| |
|
| | | || |||||| ||||||||||| |
|
|
| T |
4136535 |
attttgcaaaacttaatttcatgagct |
4136561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 502 - 662
Target Start/End: Original strand, 4136891 - 4137048
Alignment:
| Q |
502 |
tttgaagctaaagctaacaaaccaaacggtcctattttgccacttcttgatgcatgttgtttgctacatagtagttgaggatcaacttcactaggatctt |
601 |
Q |
| |
|
||||| ||||||||| ||||||||| |||||||| ||||| |||||||||||| ||||| |||| ||| |||||||||||||||||| || || |
|
|
| T |
4136891 |
tttgatgctaaagcttgcaaaccaaatggtcctatcatgccatttcttgatgcatattgttctttacagagttcttgaggatcaacttcacttgg---tt |
4136987 |
T |
|
| Q |
602 |
ctaaccagtcaccactttctagctcaggtagctcaaacaacacttctacatcaaccttaaa |
662 |
Q |
| |
|
||| | | ||| |||||| ||| | |||||||||||||| ||||| |||||| ||||||| |
|
|
| T |
4136988 |
ctagcaactcagcactttgtagattgggtagctcaaacaagacttccacatcagccttaaa |
4137048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 138
Target Start/End: Original strand, 4127505 - 4127611
Alignment:
| Q |
32 |
ttctaagtgaaatcgttttgagattaggatctatgtcgaagattgttccatatgtggttttatcaaggtcgtttcgcaatgaagacctgtaaaatgtaca |
131 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||||||||| ||||| ||| ||||| || ||| | ||| || | | ||||||||||||||||| |||||| |
|
|
| T |
4127505 |
ttctgagtgaaattgttttgagattgggatctatgtcaaagatagttgcatatatgagtttcttaagatcctgcctcaatgaagacctgtaaagtgtaca |
4127604 |
T |
|
| Q |
132 |
caactta |
138 |
Q |
| |
|
|| |||| |
|
|
| T |
4127605 |
cagctta |
4127611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 508 - 659
Target Start/End: Original strand, 4141803 - 4141951
Alignment:
| Q |
508 |
gctaaagctaacaaaccaaacggtcctattttgccacttcttgatgcatgttgtttgctacatagtagttgaggatcaacttcactaggatcttctaacc |
607 |
Q |
| |
|
||||||||| ||||||||| || ||||| |||| || ||||||||| ||||| |||| ||| |||||||||||||||||| || ||||| | |
|
|
| T |
4141803 |
gctaaagcttgcaaaccaaatggccctatcatgccttttattgatgcatattgttctttacagagttcttgaggatcaacttcacttgg---ttctagca |
4141899 |
T |
|
| Q |
608 |
agtcaccactttctagctcaggtagctcaaacaacacttctacatcaacctt |
659 |
Q |
| |
|
||| |||||||||| ||||||||||||||||| ||||| |||||| |||| |
|
|
| T |
4141900 |
cctcagcactttctagatcaggtagctcaaacaagacttccacatcagcctt |
4141951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University