View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3823_low_3 (Length: 589)

Name: NF3823_low_3
Description: NF3823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3823_low_3
NF3823_low_3
[»] chr5 (5 HSPs)
chr5 (18-581)||(41886160-41886722)
chr5 (333-520)||(41900361-41900548)
chr5 (332-520)||(32268537-32268725)
chr5 (129-204)||(32268868-32268943)
chr5 (154-201)||(41900191-41900238)
[»] chr3 (3 HSPs)
chr3 (401-520)||(51763325-51763444)
chr3 (150-194)||(51120326-51120370)
chr3 (398-435)||(1657614-1657651)
[»] scaffold1155 (1 HSPs)
scaffold1155 (401-505)||(1821-1925)
[»] scaffold0345 (1 HSPs)
scaffold0345 (401-505)||(8291-8395)
[»] scaffold0105 (1 HSPs)
scaffold0105 (401-505)||(30584-30688)
[»] chr2 (1 HSPs)
chr2 (150-194)||(45244522-45244566)
[»] chr7 (4 HSPs)
chr7 (420-520)||(10169004-10169104)
chr7 (420-520)||(10176529-10176629)
chr7 (458-520)||(10615715-10615777)
chr7 (154-191)||(10616209-10616246)
[»] chr1 (2 HSPs)
chr1 (457-521)||(19467422-19467486)
chr1 (488-520)||(17352692-17352724)
[»] chr4 (8 HSPs)
chr4 (411-514)||(553767-553870)
chr4 (457-520)||(21833268-21833331)
chr4 (398-435)||(645194-645231)
chr4 (154-194)||(1488824-1488864)
chr4 (154-194)||(1537251-1537291)
chr4 (374-434)||(1545952-1546012)
chr4 (488-520)||(3437642-3437674)
chr4 (154-194)||(12120920-12120960)
[»] chr6 (6 HSPs)
chr6 (458-520)||(6423907-6423969)
chr6 (466-520)||(8913420-8913474)
chr6 (391-440)||(9412203-9412252)
chr6 (398-435)||(11935970-11936007)
chr6 (398-435)||(11947950-11947987)
chr6 (458-514)||(19633108-19633164)
[»] chr8 (3 HSPs)
chr8 (391-440)||(17635581-17635630)
chr8 (411-440)||(17642880-17642909)
chr8 (154-194)||(17642614-17642654)


Alignment Details
Target: chr5 (Bit Score: 508; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 18 - 581
Target Start/End: Original strand, 41886160 - 41886722
Alignment:
Q  18 taaagtagcttcacaagttaacataagattatttgactggaagtccactatgaaaaggaaaagaagatctttcaaaccaactatggagtccactcaagca 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41886160 taaaatagcttcacaagttaacataagattatttgactggaagtccactatgaaaaggaaaagaagatctttcaaaccaactatggagtccactcaagca 41886259  T
Q  118 agaagaagcaaaagaaaaacaatggttggtggtttctatttacctgatgagtgttgagaatgtgtcttcaaattcctgaaagacaaccatagttgcatga 217  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41886260 agaagaagcaaaagaaaaacaatgattggtggtttctatttacctgatgagtgttgggaatgtgtcttcaaattcctgaaagacaaccatagttgcatga 41886359  T
Q  218 catctttgtcagttgtctcgaaacaattcttgtccatcaccaactgcatcagattctctctcacaatctgctatgatcaaagtcaaaccctcccttttcc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  41886360 catctttgtcagttgtctcgaaacaattcttgtccatcaccaaccgcatcagattctctctcacaatctgctgtgatcaaagtc-aaccctcccttttcc 41886458  T
Q  318 tcctcgtctactcagtagattcatcaatctcacctctctcgacctttctagcttccgtggtaacctcagtaaacttctcggccaaatctctaattttcca 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  41886459 tcctcgtctactcagtagattcatcaatctcacctctctcgacctttctagcttccgcggtaacctcagcaaacttctcggccaaatctctaattttcca 41886558  T
Q  418 ttgaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctcattt 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  41886559 ttgaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttgcgagtttttgccaaaaagattacaactttaacctctctcattt 41886658  T
Q  518 gtttgaatgtgcaatttatttatagtactgatctattcctcatctctgattgtttccctttgct 581  Q
    ||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  41886659 gttagaatgtgcaatttatttatagtactgacctattcctcatctctggttgtttccctttgct 41886722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 333 - 520
Target Start/End: Original strand, 41900361 - 41900548
Alignment:
Q  333 tagattcatcaatctcacctctctcgacctttctagcttccgtggtaacctcagtaaacttctcggccaaatctctaattttccattgaaactcacatca 432  Q
    |||||| | |||||||||||| ||| | || ||  |||||  |||||||||||  ||||||||  | ||||||||| |||||||||||||||||||||||    
T  41900361 tagatttaccaatctcacctccctcaatctctcgcgcttctatggtaacctcaacaaacttctttgtcaaatctctcattttccattgaaactcacatca 41900460  T
Q  433 ctcaatctttcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctcatttgtt 520  Q
    ||||| || ||  | ||| |  | || ||| ||  ||||||  ||| |||| |||||||||||||||||||||||||||||| |||||    
T  41900461 ctcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgtt 41900548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 332 - 520
Target Start/End: Complemental strand, 32268725 - 32268537
Alignment:
Q  332 gtagattcatcaatctcacctctctcgacctttctagcttccgtggtaacctcagtaaacttctcggccaaatctctaattttccattgaaactcacatc 431  Q
    ||||||||| ||| |||||||| |||||||| ||  | |||   ||||| ||||  || |||||| | |||||||||  |||||||||||||||||| ||    
T  32268725 gtagattcaccaacctcacctccctcgacctctcgtgtttcaacggtaaactcaacaagcttctctgtcaaatctctcgttttccattgaaactcacgtc 32268626  T
Q  432 actcaatctttcgtatcaacgtattattcccacaaatgggttg-tgagtttttgccaaaaagattacaactttgacctctctcatttgtt 520  Q
    ||||||||| ||  |  || | || |||||||||| |||||||  || ||||| | || ||||||||||||||||||||||||| |||||    
T  32268625 actcaatctctcaaacaaatgcatcattcccacaattgggttgcagacttttt-cgaagaagattacaactttgacctctctcacttgtt 32268537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 204
Target Start/End: Complemental strand, 32268943 - 32268868
Alignment:
Q  129 aagaaaaacaatggttggtggtttctatttacctgatgagtgttgagaatgtgtcttcaaattcctgaaagacaac 204  Q
    ||||||| ||||| ||  |||||  |||||||| ||||||||||| |||||||||||||||||| |||||||||||    
T  32268943 aagaaaatcaatgatttctggttcatatttaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaac 32268868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 41900191 - 41900238
Alignment:
Q  154 tatttacctgatgagtgttgagaatgtgtcttcaaattcctgaaagac 201  Q
    |||||||| ||||||||||| |||||||||||||||||||| ||||||    
T  41900191 tatttaccagatgagtgttgggaatgtgtcttcaaattcctcaaagac 41900238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 401 - 520
Target Start/End: Original strand, 51763325 - 51763444
Alignment:
Q  401 aaatctctaattttccattgaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaac 500  Q
    ||||||||  ||| |||||||||||||||||||| ||||| ||  | || | ||   |||| |||||||||||| |||||||| |  |||||||||||||    
T  51763325 aaatctctcgtttcccattgaaactcacatcacttaatctctccaaacagcttacctttcctacaaatgggttgcgagttttttcacaaaagattacaac 51763424  T
Q  501 tttgacctctctcatttgtt 520  Q
    |||||| ||||||| |||||    
T  51763425 tttgacatctctcacttgtt 51763444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 51120326 - 51120370
Alignment:
Q  150 tttctatttacctgatgagtgttgagaatgtgtcttcaaattcct 194  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||    
T  51120326 tttctatttacctgatgactgttgggaatgtgtcttcaaattcct 51120370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 435
Target Start/End: Complemental strand, 1657651 - 1657614
Alignment:
Q  398 gccaaatctctaattttccattgaaactcacatcactc 435  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  1657651 gccaaatctctagttttccattgagactcacatcactc 1657614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 505
Target Start/End: Original strand, 1821 - 1925
Alignment:
Q  401 aaatctctaattttccattgaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaac 500  Q
    ||||||||  ||| |||||||| ||||||||||||||||| || || ||||  || |||||| || |||||||| |||||||  || |||| ||||||||    
T  1821 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac 1920  T
Q  501 tttga 505  Q
    |||||    
T  1921 tttga 1925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 505
Target Start/End: Complemental strand, 8395 - 8291
Alignment:
Q  401 aaatctctaattttccattgaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaac 500  Q
    ||||||||  ||| |||||||| ||||||||||||||||| || || ||||  || |||||| || |||||||| |||||||  || |||| ||||||||    
T  8395 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac 8296  T
Q  501 tttga 505  Q
    |||||    
T  8295 tttga 8291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 505
Target Start/End: Original strand, 30584 - 30688
Alignment:
Q  401 aaatctctaattttccattgaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaac 500  Q
    ||||||||  ||| |||||||| ||||||||||||||||| || || ||||  || |||||| || |||||||| |||||||  || |||| ||||||||    
T  30584 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac 30683  T
Q  501 tttga 505  Q
    |||||    
T  30684 tttga 30688  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 45244522 - 45244566
Alignment:
Q  150 tttctatttacctgatgagtgttgagaatgtgtcttcaaattcct 194  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||    
T  45244522 tttctatttacctgatgagtgttgggaatgtgtcttgaaattcct 45244566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 520
Target Start/End: Original strand, 10169004 - 10169104
Alignment:
Q  420 gaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctcatttgt 519  Q
    |||||||||||||||| || |||| || ||| | |  |||||| ||||||||||| |||||||  |  |||| |||| ||||||||||||||||| ||||    
T  10169004 gaaactcacatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgt 10169103  T
Q  520 t 520  Q
    |    
T  10169104 t 10169104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 520
Target Start/End: Original strand, 10176529 - 10176629
Alignment:
Q  420 gaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctcatttgt 519  Q
    |||||||||||||||| || |||| || ||| | |  |||||| ||||||||||| |||||||  |  |||| |||| ||||||||||||||||| ||||    
T  10176529 gaaactcacatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgt 10176628  T
Q  520 t 520  Q
    |    
T  10176629 t 10176629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 520
Target Start/End: Complemental strand, 10615777 - 10615715
Alignment:
Q  458 ttcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctcatttgtt 520  Q
    ||||| ||||||||||  ||| |||  || ||||||||||||||||||||||||||| |||||    
T  10615777 ttcccgcaaatgggttacgagctttctcccaaaagattacaactttgacctctctcacttgtt 10615715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 10616246 - 10616209
Alignment:
Q  154 tatttacctgatgagtgttgagaatgtgtcttcaaatt 191  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  10616246 tatttacctgatgagtgttgggaatgtatcttcaaatt 10616209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 521
Target Start/End: Original strand, 19467422 - 19467486
Alignment:
Q  457 attcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctcatttgttt 521  Q
    |||||| ||||||||||| |||||||  |  |||| |||||||||||||||||||||| ||||||    
T  19467422 attcccgcaaatgggttgcgagttttcactcaaaatattacaactttgacctctctcacttgttt 19467486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 520
Target Start/End: Complemental strand, 17352724 - 17352692
Alignment:
Q  488 aaaagattacaactttgacctctctcatttgtt 520  Q
    ||||||||||||| |||||||||||||||||||    
T  17352724 aaaagattacaacattgacctctctcatttgtt 17352692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 514
Target Start/End: Complemental strand, 553870 - 553767
Alignment:
Q  411 ttttccattgaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctct 510  Q
    |||||||||||| |||||||||||| |||| ||  |  |||  |  |||||| ||||||||||| ||| |||  || |||| ||||||||||||||||||    
T  553870 ttttccattgaacctcacatcactcgatctctcccaaaaacccaccattcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacctct 553771  T
Q  511 ctca 514  Q
    ||||    
T  553770 ctca 553767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 520
Target Start/End: Original strand, 21833268 - 21833331
Alignment:
Q  457 attcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctcatttgtt 520  Q
    |||||| || |||||||| ||||||||||  |||| ||||| |||||||||||||||| |||||    
T  21833268 attcccgcagatgggttgcgagtttttgcacaaaacattactactttgacctctctcacttgtt 21833331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 435
Target Start/End: Complemental strand, 645231 - 645194
Alignment:
Q  398 gccaaatctctaattttccattgaaactcacatcactc 435  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  645231 gccaaatctctagttttccattgagactcacatcactc 645194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 1488824 - 1488864
Alignment:
Q  154 tatttacctgatgagtgttgagaatgtgtcttcaaattcct 194  Q
    ||||||||||||||||| || ||||||||| ||||||||||    
T  1488824 tatttacctgatgagtgctgggaatgtgtcgtcaaattcct 1488864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 1537251 - 1537291
Alignment:
Q  154 tatttacctgatgagtgttgagaatgtgtcttcaaattcct 194  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  1537251 tatttacctgatgagtgttgggaatgtgtattcagattcct 1537291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 374 - 434
Target Start/End: Complemental strand, 1546012 - 1545952
Alignment:
Q  374 gtggtaacctcagtaaacttctcggccaaatctctaattttccattgaaactcacatcact 434  Q
    ||||| ||||||  || ||||||  ||||||||||| ||||||||||||||||||| ||||    
T  1546012 gtggtgacctcaacaagcttctctaccaaatctctacttttccattgaaactcacaacact 1545952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 520
Target Start/End: Original strand, 3437642 - 3437674
Alignment:
Q  488 aaaagattacaactttgacctctctcatttgtt 520  Q
    ||||||||||||||||||||||||||| |||||    
T  3437642 aaaagattacaactttgacctctctcagttgtt 3437674  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 12120920 - 12120960
Alignment:
Q  154 tatttacctgatgagtgttgagaatgtgtcttcaaattcct 194  Q
    |||||||||||||||||||| ||||||||| ||| ||||||    
T  12120920 tatttacctgatgagtgttgggaatgtgtcatcagattcct 12120960  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 520
Target Start/End: Complemental strand, 6423969 - 6423907
Alignment:
Q  458 ttcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctcatttgtt 520  Q
    ||||||||||||||||| ||| |||  || |||| || ||||||||||||||||||| |||||    
T  6423969 ttcccacaaatgggttgcgagctttctcccaaaacataacaactttgacctctctcacttgtt 6423907  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 520
Target Start/End: Original strand, 8913420 - 8913474
Alignment:
Q  466 aatgggttgtgagtttttgccaaaaagattacaactttgacctctctcatttgtt 520  Q
    |||||||||  ||||||  | |||||||||||||||||||||||||||| |||||    
T  8913420 aatgggttgctagttttatctaaaaagattacaactttgacctctctcaattgtt 8913474  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 440
Target Start/End: Complemental strand, 9412252 - 9412203
Alignment:
Q  391 cttctcggccaaatctctaattttccattgaaactcacatcactcaatct 440  Q
    |||||||| |||||||||  |||||||||||||||| ||||||| |||||    
T  9412252 cttctcggtcaaatctctcgttttccattgaaactctcatcacttaatct 9412203  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 435
Target Start/End: Original strand, 11935970 - 11936007
Alignment:
Q  398 gccaaatctctaattttccattgaaactcacatcactc 435  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  11935970 gccaaatctctagttttccattgagactcacatcactc 11936007  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 435
Target Start/End: Original strand, 11947950 - 11947987
Alignment:
Q  398 gccaaatctctaattttccattgaaactcacatcactc 435  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  11947950 gccaaatctctagttttccattgagactcacatcactc 11947987  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 514
Target Start/End: Complemental strand, 19633164 - 19633108
Alignment:
Q  458 ttcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctca 514  Q
    ||||||||||||||||| ||| |||  || |||  ||||||||||||||||||||||    
T  19633164 ttcccacaaatgggttgcgagctttctccgaaagcattacaactttgacctctctca 19633108  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 440
Target Start/End: Original strand, 17635581 - 17635630
Alignment:
Q  391 cttctcggccaaatctctaattttccattgaaactcacatcactcaatct 440  Q
    |||||| || ||||||||  ||||||||||||||||| ||||||||||||    
T  17635581 cttctctgcgaaatctctccttttccattgaaactcatatcactcaatct 17635630  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 440
Target Start/End: Original strand, 17642880 - 17642909
Alignment:
Q  411 ttttccattgaaactcacatcactcaatct 440  Q
    ||||||||||||||||||||||||||||||    
T  17642880 ttttccattgaaactcacatcactcaatct 17642909  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 17642614 - 17642654
Alignment:
Q  154 tatttacctgatgagtgttgagaatgtgtcttcaaattcct 194  Q
    |||||||||||||||||||| || | |||||||||||||||    
T  17642614 tatttacctgatgagtgttgggagtctgtcttcaaattcct 17642654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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