View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3823_low_5 (Length: 547)

Name: NF3823_low_5
Description: NF3823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3823_low_5
NF3823_low_5
[»] chr4 (11 HSPs)
chr4 (1-537)||(33759098-33759634)
chr4 (165-206)||(30848643-30848684)
chr4 (165-203)||(18508871-18508909)
chr4 (137-193)||(2734168-2734225)
chr4 (148-205)||(12276820-12276878)
chr4 (148-197)||(23151590-23151640)
chr4 (165-206)||(24980676-24980717)
chr4 (149-193)||(40391257-40391302)
chr4 (165-206)||(54235273-54235314)
chr4 (146-206)||(55827292-55827353)
chr4 (165-205)||(3249703-3249743)
[»] chr5 (11 HSPs)
chr5 (2-111)||(11598046-11598155)
chr5 (153-206)||(968333-968387)
chr5 (148-205)||(34252717-34252775)
chr5 (154-205)||(19644450-19644502)
chr5 (173-205)||(23344907-23344939)
chr5 (146-205)||(20219495-20219554)
chr5 (148-205)||(9956550-9956608)
chr5 (165-206)||(39030581-39030622)
chr5 (153-193)||(42324944-42324985)
chr5 (166-202)||(14611071-14611107)
chr5 (165-205)||(16500575-16500615)
[»] chr2 (11 HSPs)
chr2 (138-205)||(44726834-44726902)
chr2 (150-205)||(16180487-16180543)
chr2 (148-206)||(17437177-17437236)
chr2 (148-205)||(2884256-2884314)
chr2 (150-206)||(10459268-10459325)
chr2 (148-206)||(31469071-31469130)
chr2 (148-206)||(33829389-33829448)
chr2 (154-206)||(5713276-5713329)
chr2 (165-206)||(11386327-11386368)
chr2 (153-193)||(30517918-30517959)
chr2 (165-206)||(41912128-41912169)
[»] chr7 (8 HSPs)
chr7 (154-206)||(23971236-23971288)
chr7 (149-206)||(6803308-6803366)
chr7 (148-206)||(47967913-47967972)
chr7 (148-205)||(18732042-18732099)
chr7 (149-206)||(5026141-5026199)
chr7 (165-206)||(16866452-16866493)
chr7 (154-206)||(30794447-30794500)
chr7 (165-206)||(44816485-44816526)
[»] chr1 (7 HSPs)
chr1 (152-206)||(3694038-3694093)
chr1 (151-193)||(35310316-35310359)
chr1 (154-206)||(19758322-19758375)
chr1 (165-206)||(47543617-47543658)
chr1 (148-206)||(3739865-3739924)
chr1 (148-206)||(30693335-30693394)
chr1 (170-206)||(10498377-10498413)
[»] scaffold2113 (1 HSPs)
scaffold2113 (150-206)||(627-684)
[»] chr6 (12 HSPs)
chr6 (146-206)||(31522659-31522719)
chr6 (148-206)||(8437825-8437884)
chr6 (148-206)||(9829891-9829950)
chr6 (148-205)||(1986204-1986262)
chr6 (165-202)||(2282416-2282453)
chr6 (165-206)||(31323832-31323873)
chr6 (153-203)||(28596080-28596131)
chr6 (148-206)||(35003759-35003818)
chr6 (148-204)||(7343294-7343351)
chr6 (149-205)||(14446697-14446754)
chr6 (153-205)||(24640142-24640195)
chr6 (150-206)||(28004674-28004731)
[»] chr8 (5 HSPs)
chr8 (165-206)||(15114635-15114676)
chr8 (158-206)||(11196268-11196316)
chr8 (154-205)||(44080727-44080779)
chr8 (149-206)||(33557826-33557884)
chr8 (165-206)||(13209982-13210023)
[»] chr3 (9 HSPs)
chr3 (165-206)||(3956176-3956217)
chr3 (165-206)||(26104236-26104277)
chr3 (154-206)||(31280161-31280214)
chr3 (135-206)||(47783065-47783137)
chr3 (165-206)||(32221521-32221562)
chr3 (165-206)||(40955796-40955837)
chr3 (165-205)||(26914501-26914541)
chr3 (165-205)||(40905820-40905860)
chr3 (146-193)||(46829106-46829154)


Alignment Details
Target: chr4 (Bit Score: 500; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 1 - 537
Target Start/End: Complemental strand, 33759634 - 33759098
Alignment:
Q  1 actgagcatgaaccggaatctcagtggtaatatcatggtgagtaattgggaaaaacggagcctaatgcttatcatcaacgggcacaccagctggtaacca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33759634 actgagcatgaaccggaatctcagtggtaatatcatggtgagtaattgggaaaaacggagcctaatgcttatcatcaacgggcacaccagctggtaacca 33759535  T
Q  101 tattttgaaaagattnnnnnnnttagtttgcttgagtgtactcatttcgtcccaaaatataagtaaaattggtcaacaaaaattaatgtatttagttcaa 200  Q
    ||||||||||| |||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33759534 tattttgaaaacattaaaaaaattagtttgcttgagtgtactcatttcgtcccaaaatataagtaaaattggtcaacaaaaattaatgtatttagttcaa 33759435  T
Q  201 aatttgacttatggtttgttacaactagaaagtcactaacatttatacttatcaattaaaaccaaaatttcattagaaaagatacattgttcataagtta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33759434 aatttgacttatggtttgttacaactagaaagtcactaacatttatacttatcaattaaaaccaaaatttcattagaaaagatacattgttcataagtta 33759335  T
Q  301 catgcattaacgcaataaaataaatgtgaagacggatacaagtattggtatgaacactggtcacacacgataaagaaattgtgtgatgaattttttagac 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33759334 catgcattaacgcaataaaataaatgtgaagacggatacaagtattggtatgaacactggtcacacacgataaagaaattgtgtgatgaattttttagac 33759235  T
Q  401 caactataactaaaaatagatttcacagacaaacccacgtagtcattaaatgaataaacatcaaacagatagagaagagatccaacacagggttttgatt 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||    
T  33759234 caactataactaaaaatagatttcacagacaaacccacgtagtcattaaatgaataaacaccaaacaaatagagaagagatccaacgcagggttttgatt 33759135  T
Q  501 caacaacacaacatacaaaatgatgcttgaagaatta 537  Q
    |||||||||||||||||||||||||||||||||||||    
T  33759134 caacaacacaacatacaaaatgatgcttgaagaatta 33759098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 30848684 - 30848643
Alignment:
Q  165 aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  30848684 aaaattggtcaacaaaaattaatgtattttgttcaaaatttg 30848643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 18508909 - 18508871
Alignment:
Q  165 aaaattggtcaacaaaaattaatgtatttagttcaaaat 203  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  18508909 aaaattggtcaacaaaagttaatgtatttagttcaaaat 18508871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 2734168 - 2734225
Alignment:
Q  137 tgtactcatttcgtcccaaaatataagt-aaaattggtcaacaaaaattaatgtattt 193  Q
    ||||||| || ||||||||||||||||| |||||| |||||||||| |||||||||||    
T  2734168 tgtactccttccgtcccaaaatataagtaaaaattagtcaacaaaagttaatgtattt 2734225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 12276820 - 12276878
Alignment:
Q  148 cgtcccaaaatataagtaaa-attggtcaacaaaaattaatgtatttagttcaaaattt 205  Q
    ||||| |||||||||||||| |||||||| ||||| |||||||||||  ||||||||||    
T  12276820 cgtcctaaaatataagtaaagattggtcagcaaaagttaatgtatttgattcaaaattt 12276878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 23151640 - 23151590
Alignment:
Q  148 cgtcccaaaatataa-gtaaaattggtcaacaaaaattaatgtatttagtt 197  Q
    |||| |||||||||| | ||||||| |||||||||||||||||||||||||    
T  23151640 cgtctcaaaatataaagaaaaattgatcaacaaaaattaatgtatttagtt 23151590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 24980717 - 24980676
Alignment:
Q  165 aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    |||||| |||||||||||||||||||||| || |||||||||    
T  24980717 aaaatttgtcaacaaaaattaatgtattttgtacaaaatttg 24980676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 193
Target Start/End: Original strand, 40391257 - 40391302
Alignment:
Q  149 gtcccaaaatataagtaaaattgg-tcaacaaaaattaatgtattt 193  Q
    |||||||||||||||||||| | | |||||||||||||||||||||    
T  40391257 gtcccaaaatataagtaaaaatcgatcaacaaaaattaatgtattt 40391302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 54235314 - 54235273
Alignment:
Q  165 aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    ||||||| ||||||||| ||||||||||| ||||||||||||    
T  54235314 aaaattgctcaacaaaagttaatgtatttggttcaaaatttg 54235273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 55827353 - 55827292
Alignment:
Q  146 ttcgtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    |||||||||||||||||| |||| ||||||||||||| ||||| ||||| ||| ||| ||||    
T  55827353 ttcgtcccaaaatataagcaaaaattggtcaacaaaagttaatatatttggttaaaattttg 55827292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 3249703 - 3249743
Alignment:
Q  165 aaaattggtcaacaaaaattaatgtatttagttcaaaattt 205  Q
    |||||||||| |||||| ||||||||||| |||||||||||    
T  3249703 aaaattggtcgacaaaagttaatgtatttggttcaaaattt 3249743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 6e-29; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 11598046 - 11598155
Alignment:
Q  2 ctgagcatgaaccggaatctcagtggtaatatcatggtgagtaattgggaaaaacggagcctaatgcttatcatcaacgggcacaccagctggtaaccat 101  Q
    |||||||||||| ||||||||| ||| ||||||||||||| | ||||||||||| |||| | ||| |||||||||||| ||||||||||||||||| |||    
T  11598046 ctgagcatgaactggaatctcattggcaatatcatggtgaatgattgggaaaaatggaggccaattcttatcatcaacaggcacaccagctggtaagcat 11598145  T
Q  102 attttgaaaa 111  Q
    ||||||||||    
T  11598146 attttgaaaa 11598155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 968387 - 968333
Alignment:
Q  153 caaaatataagtaaaattg-gtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    |||||||||||||||| || |||||||||||||||| ||||||||||||||||||    
T  968387 caaaatataagtaaaaatgagtcaacaaaaattaatatatttagttcaaaatttg 968333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 34252717 - 34252775
Alignment:
Q  148 cgtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaattt 205  Q
    ||||||||||| |||| |||| ||||||||||||| ||||||||||| |||||||||||    
T  34252717 cgtcccaaaatgtaagcaaaaattggtcaacaaaagttaatgtatttggttcaaaattt 34252775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 19644502 - 19644450
Alignment:
Q  154 aaaatataagtaa-aattggtcaacaaaaattaatgtatttagttcaaaattt 205  Q
    ||||||||||||| ||||| |||||||||||||| |||||| |||||||||||    
T  19644502 aaaatataagtaagaattgatcaacaaaaattaacgtatttggttcaaaattt 19644450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 23344907 - 23344939
Alignment:
Q  173 tcaacaaaaattaatgtatttagttcaaaattt 205  Q
    |||||||||||||||||||||||||||||||||    
T  23344907 tcaacaaaaattaatgtatttagttcaaaattt 23344939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 205
Target Start/End: Original strand, 20219495 - 20219554
Alignment:
Q  146 ttcgtcccaaaatataagtaaaattggtcaacaaaaattaatgtatttagttcaaaattt 205  Q
    ||||||| ||||| |||||||||||| ||||||||| ||||| |||||  ||||||||||    
T  20219495 ttcgtcctaaaatgtaagtaaaattgatcaacaaaagttaatatatttgattcaaaattt 20219554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 205
Target Start/End: Complemental strand, 9956608 - 9956550
Alignment:
Q  148 cgtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaattt 205  Q
    ||||||||||| ||||||||| ||||| ||||||| |||||||||||  ||||||||||    
T  9956608 cgtcccaaaatgtaagtaaaaattggttaacaaaagttaatgtatttgattcaaaattt 9956550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 39030581 - 39030622
Alignment:
Q  165 aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    ||||||||||||||||| ||||||||||| ||| ||||||||    
T  39030581 aaaattggtcaacaaaagttaatgtatttggttaaaaatttg 39030622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 42324985 - 42324944
Alignment:
Q  153 caaaatataagtaaaa-ttggtcaacaaaaattaatgtattt 193  Q
    |||||||||||||||| ||||||||||||| |||||||||||    
T  42324985 caaaatataagtaaaaattggtcaacaaaagttaatgtattt 42324944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 14611107 - 14611071
Alignment:
Q  166 aaattggtcaacaaaaattaatgtatttagttcaaaa 202  Q
    |||||||||||| |||||| |||||||||||||||||    
T  14611107 aaattggtcaactaaaatttatgtatttagttcaaaa 14611071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 16500575 - 16500615
Alignment:
Q  165 aaaattggtcaacaaaaattaatgtatttagttcaaaattt 205  Q
    ||||||| |||||||||||||||||| || |||||||||||    
T  16500575 aaaattgttcaacaaaaattaatgtaattggttcaaaattt 16500615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 44726902 - 44726834
Alignment:
Q  138 gtactcatttcgtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaattt 205  Q
    ||||||||||||||| |||||||||| |||| ||| ||||||||||||||||||||||||| |||||||    
T  44726902 gtactcatttcgtccaaaaatataagaaaaaattgatcaacaaaaattaatgtatttagtttaaaattt 44726834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 16180543 - 16180487
Alignment:
Q  150 tcccaaaatataagtaaaatt-ggtcaacaaaaattaatgtatttagttcaaaattt 205  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||    
T  16180543 tcccaaaatataagtaaaatttggtcaacaaaagttaatgtatttggttcaaaattt 16180487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 17437236 - 17437177
Alignment:
Q  148 cgtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    |||||||||||||||  |||| || |||||||||||||||||||||||||||||||||||    
T  17437236 cgtcccaaaatataaacaaaaatttgtcaacaaaaattaatgtatttagttcaaaatttg 17437177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 2884256 - 2884314
Alignment:
Q  148 cgtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaattt 205  Q
    ||||| ||||||||||||||| || |||||||||||||||||||||| |||||||||||    
T  2884256 cgtcctaaaatataagtaaaaatttgtcaacaaaaattaatgtatttggttcaaaattt 2884314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 10459268 - 10459325
Alignment:
Q  150 tcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    |||||||||||||| |||| ||||||||||||| ||||||||||| ||||||||||||    
T  10459268 tcccaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttcaaaatttg 10459325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 31469071 - 31469130
Alignment:
Q  148 cgtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    |||||||||||||||| |||| ||||||||||||| ||||||||||| ||| ||||||||    
T  31469071 cgtcccaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttg 31469130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 33829389 - 33829448
Alignment:
Q  148 cgtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    |||||||||||||||  |||| ||||||||||||||||||| ||||| || |||||||||    
T  33829389 cgtcccaaaatataaacaaaaattggtcaacaaaaattaatatatttggtacaaaatttg 33829448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 5713329 - 5713276
Alignment:
Q  154 aaaatataagtaaaatt-ggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    ||||||||| ||||||| ||||||| |||||||| ||||||| |||||||||||    
T  5713329 aaaatataaataaaatttggtcaaccaaaattaacgtatttaattcaaaatttg 5713276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 11386327 - 11386368
Alignment:
Q  165 aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    ||||||| ||||||||||||||| |||||| |||||||||||    
T  11386327 aaaattgatcaacaaaaattaatatatttaattcaaaatttg 11386368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 30517959 - 30517918
Alignment:
Q  153 caaaatataagtaaaa-ttggtcaacaaaaattaatgtattt 193  Q
    |||||||||||||||| || ||||||||||||||||||||||    
T  30517959 caaaatataagtaaaaatttgtcaacaaaaattaatgtattt 30517918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 41912169 - 41912128
Alignment:
Q  165 aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    ||||||| ||||||||||||||||||| | ||||||||||||    
T  41912169 aaaattgttcaacaaaaattaatgtatctggttcaaaatttg 41912128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 23971288 - 23971236
Alignment:
Q  154 aaaatataagtaaaattggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    |||||||||| ||||||||||||||||||| ||| ||||||||||||||||||    
T  23971288 aaaatataagaaaaattggtcaacaaaaataaatatatttagttcaaaatttg 23971236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 6803308 - 6803366
Alignment:
Q  149 gtcccaaaatataagtaaaatt-ggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    ||||||||||||||| |||||| ||||||||||| ||||||||||||||| ||||||||    
T  6803308 gtcccaaaatataagcaaaatttggtcaacaaaagttaatgtatttagtttaaaatttg 6803366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 47967913 - 47967972
Alignment:
Q  148 cgtcccaaaatataagtaaaatt-ggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    |||||||||||||||  |||||| |||||||||||||| |||||||||||| ||||||||    
T  47967913 cgtcccaaaatataaacaaaattcggtcaacaaaaatttatgtatttagtttaaaatttg 47967972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 148 - 205
Target Start/End: Complemental strand, 18732099 - 18732042
Alignment:
Q  148 cgtcccaaaatataagtaaaattggtcaacaaaaattaatgtatttagttcaaaattt 205  Q
    ||||| ||||| |||| |||||||||||| |||| ||||||||||| |||||||||||    
T  18732099 cgtcctaaaatgtaagaaaaattggtcaataaaagttaatgtatttggttcaaaattt 18732042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 5026141 - 5026199
Alignment:
Q  149 gtcccaaaatataag-taaaattggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    |||||||||||||||  ||||||||| ||||||| ||||| |||||||| |||||||||    
T  5026141 gtcccaaaatataagcaaaaattggttaacaaaagttaatatatttagtccaaaatttg 5026199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 16866493 - 16866452
Alignment:
Q  165 aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    ||||||||||||||||| ||||||||||| ||| ||||||||    
T  16866493 aaaattggtcaacaaaagttaatgtatttggttaaaaatttg 16866452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 30794447 - 30794500
Alignment:
Q  154 aaaatataagtaaaatt-ggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    ||||||||||||||||| ||||||||||| ||||| |||||  |||||||||||    
T  30794447 aaaatataagtaaaatttggtcaacaaaatttaatatatttgattcaaaatttg 30794500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 44816485 - 44816526
Alignment:
Q  165 aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    |||||||| |||||||| ||||||||||| ||||||||||||    
T  44816485 aaaattggccaacaaaagttaatgtatttggttcaaaatttg 44816526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 3694093 - 3694038
Alignment:
Q  152 ccaaaatataagta-aaattggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    |||||||||||||| ||||||||||||||||||||||||||||  |||||||||||    
T  3694093 ccaaaatataagtagaaattggtcaacaaaaattaatgtatttgattcaaaatttg 3694038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 151 - 193
Target Start/End: Complemental strand, 35310359 - 35310316
Alignment:
Q  151 cccaaaatataagtaaaa-ttggtcaacaaaaattaatgtattt 193  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  35310359 cccaaaatataagtaaaaattggtcaacaaaaattaatgtattt 35310316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 19758375 - 19758322
Alignment:
Q  154 aaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||| | ||||||    
T  19758375 aaaatataagtaaaaattggtcaacaaaagttaatgtatttagtttataatttg 19758322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 47543617 - 47543658
Alignment:
Q  165 aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    |||||||||||||||||||||||| |||| ||||||||||||    
T  47543617 aaaattggtcaacaaaaattaatgaatttggttcaaaatttg 47543658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 3739924 - 3739865
Alignment:
Q  148 cgtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    ||||| |||||||||| |||| ||||||||||||| ||||||||||| ||| ||||||||    
T  3739924 cgtcctaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttg 3739865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 30693335 - 30693394
Alignment:
Q  148 cgtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    ||||| ||||||||| ||||| ||| |||||||||||||||||||||  |||||||||||    
T  30693335 cgtccgaaaatataaataaaaattgatcaacaaaaattaatgtatttgattcaaaatttg 30693394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 10498413 - 10498377
Alignment:
Q  170 tggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  10498413 tggtcaacaaaaattaatatatttagtttaaaatttg 10498377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2113 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold2113
Description:

Target: scaffold2113; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 684 - 627
Alignment:
Q  150 tcccaaaatataagt-aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    ||||||||||||||| |||||| |||||||||| ||| ||||||||||||||||||||    
T  684 tcccaaaatataagtgaaaattagtcaacaaaagttattgtatttagttcaaaatttg 627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 31522719 - 31522659
Alignment:
Q  146 ttcgtcccaaaatataagtaaaattggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    ||||||||||||| |||| ||||||||||||||||| |||||| ||||  |||||||||||    
T  31522719 ttcgtcccaaaatgtaagcaaaattggtcaacaaaagttaatgcatttgattcaaaatttg 31522659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 8437884 - 8437825
Alignment:
Q  148 cgtcccaaaatataagtaaaattg-gtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    |||| ||||||||||||||||||  ||||||||||||||||||||||  |||||||||||    
T  8437884 cgtctcaaaatataagtaaaatttagtcaacaaaaattaatgtatttgattcaaaatttg 8437825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 9829891 - 9829950
Alignment:
Q  148 cgtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    |||||| |||||||||||||| || |||||||||||||||||||||| ||| ||||||||    
T  9829891 cgtccctaaatataagtaaaaattagtcaacaaaaattaatgtattttgtttaaaatttg 9829950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 1986204 - 1986262
Alignment:
Q  148 cgtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaattt 205  Q
    ||||| ||||||||||||||| |||||||| ||||||||||| |||||||| |||||||    
T  1986204 cgtcctaaaatataagtaaaagttggtcaataaaaattaatgcatttagtttaaaattt 1986262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 2282416 - 2282453
Alignment:
Q  165 aaaattggtcaacaaaaattaatgtatttagttcaaaa 202  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  2282416 aaaattggtcaacaaaagttaatgtatttagttcaaaa 2282453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 31323832 - 31323873
Alignment:
Q  165 aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    ||||||||||||||||| ||||||||||| ||||||||||||    
T  31323832 aaaattggtcaacaaaagttaatgtattttgttcaaaatttg 31323873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 28596080 - 28596131
Alignment:
Q  153 caaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaat 203  Q
    |||||| ||||||||| ||||||||||||||||||| ||||| |||||||||    
T  28596080 caaaatgtaagtaaaaattggtcaacaaaaattaatatatttggttcaaaat 28596131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 35003759 - 35003818
Alignment:
Q  148 cgtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    ||||| ||||||||||||||| ||||| || ||||||||||||||||  |||||||||||    
T  35003759 cgtcctaaaatataagtaaaaattggttaataaaaattaatgtatttgattcaaaatttg 35003818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 7343351 - 7343294
Alignment:
Q  148 cgtcccaaaatataagt-aaaattggtcaacaaaaattaatgtatttagttcaaaatt 204  Q
    ||||| ||||||||||| ||||||| ||||||||| ||||| |||||| |||||||||    
T  7343351 cgtcctaaaatataagtaaaaattgatcaacaaaagttaatatatttatttcaaaatt 7343294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 14446697 - 14446754
Alignment:
Q  149 gtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaattt 205  Q
    |||||||||| |||| |||| ||||||||||||| ||||||||| | |||||||||||    
T  14446697 gtcccaaaatgtaagcaaaagttggtcaacaaaagttaatgtatgttgttcaaaattt 14446754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 24640195 - 24640142
Alignment:
Q  153 caaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaattt 205  Q
    |||||||| ||||||| ||| ||||||||| ||||| |||||||||||||||||    
T  24640195 caaaatattagtaaaagttgatcaacaaaagttaatttatttagttcaaaattt 24640142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 28004731 - 28004674
Alignment:
Q  150 tcccaaaatataagt-aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    ||||||||||||||  |||||| |||||||||| ||||||||||| | ||||||||||    
T  28004731 tcccaaaatataagggaaaattagtcaacaaaagttaatgtatttggctcaaaatttg 28004674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 15114635 - 15114676
Alignment:
Q  165 aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    |||||||||||||||||||||||||||||  |||||||||||    
T  15114635 aaaattggtcaacaaaaattaatgtatttgattcaaaatttg 15114676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 11196316 - 11196268
Alignment:
Q  158 tataagtaaaattggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    |||||| |||| || |||||||||||||||||||||| |||||||||||    
T  11196316 tataagcaaaactgatcaacaaaaattaatgtatttaattcaaaatttg 11196268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 44080779 - 44080727
Alignment:
Q  154 aaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaattt 205  Q
    ||||||||||||||| ||| ||||||||||||||||||||||  |||||||||    
T  44080779 aaaatataagtaaaaattgatcaacaaaaattaatgtatttaactcaaaattt 44080727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 33557884 - 33557826
Alignment:
Q  149 gtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    |||| |||| |||||||||| ||| |||| |||| ||||||||||||||||||||||||    
T  33557884 gtcctaaaacataagtaaaaattgatcaataaaagttaatgtatttagttcaaaatttg 33557826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 13209982 - 13210023
Alignment:
Q  165 aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    ||||||| ||||||||| ||||||||||| ||||||||||||    
T  13209982 aaaattgatcaacaaaagttaatgtatttggttcaaaatttg 13210023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 3956176 - 3956217
Alignment:
Q  165 aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    ||||||||||||||||||| ||||||||||||| ||||||||    
T  3956176 aaaattggtcaacaaaaataaatgtatttagtttaaaatttg 3956217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 26104236 - 26104277
Alignment:
Q  165 aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    ||||||||| |||||||| |||||||||||||||||||||||    
T  26104236 aaaattggttaacaaaaactaatgtatttagttcaaaatttg 26104277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 31280161 - 31280214
Alignment:
Q  154 aaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    ||||||||||||||| ||| ||||||||| ||||||||||| ||||||||||||    
T  31280161 aaaatataagtaaaaattgatcaacaaaatttaatgtatttggttcaaaatttg 31280214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 206
Target Start/End: Original strand, 47783065 - 47783137
Alignment:
Q  135 agtgtactcatttcgtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    ||||||||| || | | ||||||| ||||||||| |||||||| |||| ||||||||||| ||||||||||||    
T  47783065 agtgtactccttccattccaaaatgtaagtaaaaattggtcaaaaaaagttaatgtatttggttcaaaatttg 47783137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 32221562 - 32221521
Alignment:
Q  165 aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    |||||| |||||||||| ||||||||||| ||||||||||||    
T  32221562 aaaattagtcaacaaaagttaatgtatttggttcaaaatttg 32221521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 40955796 - 40955837
Alignment:
Q  165 aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 206  Q
    ||||||| |||| |||||||| ||||||||||||||||||||    
T  40955796 aaaattgatcaataaaaattattgtatttagttcaaaatttg 40955837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 26914541 - 26914501
Alignment:
Q  165 aaaattggtcaacaaaaattaatgtatttagttcaaaattt 205  Q
    ||||||| ||||||||||||||||||| | |||||||||||    
T  26914541 aaaattgatcaacaaaaattaatgtatgtggttcaaaattt 26914501  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 40905820 - 40905860
Alignment:
Q  165 aaaattggtcaacaaaaattaatgtatttagttcaaaattt 205  Q
    ||||||||||||||||| ||||| ||||| |||||||||||    
T  40905820 aaaattggtcaacaaaagttaatttatttggttcaaaattt 40905860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 46829154 - 46829106
Alignment:
Q  146 ttcgtcccaaaatataagtaaaa-ttggtcaacaaaaattaatgtattt 193  Q
    ||||||| |||||||||| |||| ||||||||||||| |||||||||||    
T  46829154 ttcgtcctaaaatataagcaaaaattggtcaacaaaagttaatgtattt 46829106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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