View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3823_low_6 (Length: 541)
Name: NF3823_low_6
Description: NF3823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3823_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 490; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 1 - 530
Target Start/End: Original strand, 35026342 - 35026871
Alignment:
| Q |
1 |
ctcacattgatggtcttccctttggtgctgaaacatcttcagatgttcctccttttttattccctcttattgctacagcaatggatcaaacagaaaaaca |
100 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||| || || |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35026342 |
ctcacattgatggtcttcccgatggtgctgaaacatcttcagatgtacccttttctttagtccctcttattgctacagcaatggatcaaacagaaaaaca |
35026441 |
T |
|
| Q |
101 |
aattgaacatcttcttaaggaactaaacccacaaatagttttctttgattttcaatattggcttccaaatttgactcaaaaacttggcataaaaagtctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35026442 |
aattgaacatcttcttaaggaactaaacccacaaatagttttctttgattttcaatattggcttccaaatttgactcaaaaacttggcataaaaagtctt |
35026541 |
T |
|
| Q |
201 |
caatattggataacaagtccattttcaatatcttatttttggaatggaccaagacatagccaaggaaaaggattaactgtagatgatctcaagaaaccac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35026542 |
caatattggataacaagtccattttcaatatcttatttttggaatggaccaagacatagccaaggaaaaggattaactgtagatgatctcaagaaaccac |
35026641 |
T |
|
| Q |
301 |
cttcagggtaccctgatggttctatcaagctttatcaacatgaacttcaatttctgtcttcaacaaggaaacttgtcttcggaagtggtgtatttttata |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35026642 |
cttcagggtaccctgatggttctatcaagctttatcaacatgaacttcaatttctatcttcaacaaggaaacttgtcttcggaagtggtgtatttttata |
35026741 |
T |
|
| Q |
401 |
cgatcgtttgcatataggtacaagtttagctgatgcaattggtttcaaaggttgcaaagaacttgatgaaccatatgctgaatttcttggaaatttttat |
500 |
Q |
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| T |
35026742 |
cgatcgtttgcatataggtacaagtttagctgatgcaattggtttcaaaggttgcaaagaacttgatgaaccatatgctgaatttcttggaaatttttat |
35026841 |
T |
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| Q |
501 |
ggaaaaccttatctactttctggtcctttg |
530 |
Q |
| |
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|||||||||||||||||||| ||||||||| |
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| T |
35026842 |
ggaaaaccttatctactttcaggtcctttg |
35026871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 26 - 205
Target Start/End: Complemental strand, 34998770 - 34998591
Alignment:
| Q |
26 |
tgctgaaacatcttcagatgttcctccttttttattccctcttattgctacagcaatggatcaaacagaaaaacaaattgaacatcttcttaaggaacta |
125 |
Q |
| |
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||||||||| |||||||||| || ||| |||||||||||||||||||||||| ||||| ||||| || |||||||||||| |||||| ||||||||| |
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| T |
34998770 |
tgctgaaactacttcagatgtaccctcttctttattccctcttattgctacagccatggaccaaactgagaaacaaattgaatctcttctaaaggaacta |
34998671 |
T |
|
| Q |
126 |
aacccacaaatagttttctttgattttcaatattggcttccaaatttgactcaaaaacttggcataaaaagtcttcaata |
205 |
Q |
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|| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||| |
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| T |
34998670 |
aagccacaaatagttttctttgattttcaatattggctaccaaacttgactcaaaaacttggtatcaaaagtcttcaata |
34998591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 26 - 205
Target Start/End: Complemental strand, 35012258 - 35012079
Alignment:
| Q |
26 |
tgctgaaacatcttcagatgttcctccttttttattccctcttattgctacagcaatggatcaaacagaaaaacaaattgaacatcttcttaaggaacta |
125 |
Q |
| |
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|||||||||| |||||||||| || || |||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||| | ||||| || |
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| T |
35012258 |
tgctgaaacaacttcagatgtgccattttctttattccctcttattgctacagccatggatcaaacagataaacaaattgaacttcttttgaaggagtta |
35012159 |
T |
|
| Q |
126 |
aacccacaaatagttttctttgattttcaatattggcttccaaatttgactcaaaaacttggcataaaaagtcttcaata |
205 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| || |||||||||||||| |
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| T |
35012158 |
aagccacaaatagttttctttgattttcaatattggctacctaacttgactcaaaaacttggtatcaaaagtcttcaata |
35012079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 26 - 205
Target Start/End: Complemental strand, 35019284 - 35019105
Alignment:
| Q |
26 |
tgctgaaacatcttcagatgttcctccttttttattccctcttattgctacagcaatggatcaaacagaaaaacaaattgaacatcttcttaaggaacta |
125 |
Q |
| |
|
|||||||||| |||||||||| || || |||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||| | ||||| || |
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| T |
35019284 |
tgctgaaacaacttcagatgtgccattttctttattccctcttattgctacagccatggatcaaacagataaacaaattgaacttcttttgaaggagtta |
35019185 |
T |
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| Q |
126 |
aacccacaaatagttttctttgattttcaatattggcttccaaatttgactcaaaaacttggcataaaaagtcttcaata |
205 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| || |||||||||||||| |
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| T |
35019184 |
aagccacaaatagttttctttgattttcaatattggctacctaacttgactcaaaaacttggtatcaaaagtcttcaata |
35019105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 10 - 527
Target Start/End: Original strand, 35033360 - 35033877
Alignment:
| Q |
10 |
atggtcttccctttggtgctgaaacatcttcagatgttcctccttttttattccctcttattgctacagcaatggatcaaacagaaaaacaaattgaaca |
109 |
Q |
| |
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|||||||||| ||| |||||||||| |||||||||| || || |||| ||||||||||||||||||| |||||||||||||| || | |||||| |
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| T |
35033360 |
atggtcttcctcttgatgctgaaacaacttcagatgtgcccttttctttagtccctcttattgctacagccatggatcaaacagagaaggatattgaaat |
35033459 |
T |
|
| Q |
110 |
tcttcttaaggaactaaacccacaaatagttttctttgattttcaatattggcttccaaatttgactcaaaaacttggcataaaaagtcttcaatattgg |
209 |
Q |
| |
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|||||| || ||| |||| |||||||||||||||||||| || ||||||||||||||||| |||||| |||| |||| ||| |||||||| ||||| |
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| T |
35033460 |
tcttctcaaagaaataaagccacaaatagttttctttgacttccaatattggcttccaaagttgactaaaaaccttgacatcaaaagtctgcaatacatt |
35033559 |
T |
|
| Q |
210 |
ataacaagtccattttcaatatcttatttttggaatggaccaagacatagccaaggaaaaggattaactgtagatgatctcaagaaaccaccttcagggt |
309 |
Q |
| |
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||| | |||| | |||| | ||||| | | | || || || || | ||| |||| ||||||| | |||| ||| ||||||||||||||||| |
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| T |
35033560 |
atattgactccagtatcaacagcttatctcggatgtttacaaaaactaagtctagggaaagatttaactgatgttgatatcatgaaaccaccttcagggt |
35033659 |
T |
|
| Q |
310 |
accctgatggttctatcaagctttatcaacatgaacttcaatttctgtcttcaacaaggaaacttgtcttcggaagtggtgtatttttatacgatcgttt |
409 |
Q |
| |
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||||||| || |||||| ||||| |||| ||||||| ||| || |||||||||||||| ||| || ||||||||||| || |||| |||||||| |
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| T |
35033660 |
tccctgattcttgcatcaagttttataaacacgaacttcgattcctagcttcaacaaggaaaattgcatttggaagtggtgttttcttatttgatcgttt |
35033759 |
T |
|
| Q |
410 |
gcatataggtacaagtttagctgatgcaattggtttcaaaggttgcaaagaacttgatgaaccatatgctgaatttcttggaaatttttatggaaaacct |
509 |
Q |
| |
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||| || ||||||| | || |||||| ||||||||||||||||||| ||| |||||| |||||||||||| | | ||| || | ||| |||||||||| |
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| T |
35033760 |
gcacattggtacaacctctgcagatgcagttggtttcaaaggttgcaatgaagttgatggaccatatgctgattatattgaaactgtttttggaaaacct |
35033859 |
T |
|
| Q |
510 |
tatctactttctggtcct |
527 |
Q |
| |
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||| ||||| |||||| |
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| T |
35033860 |
gttctgctttcaggtcct |
35033877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 35036855 - 35036810
Alignment:
| Q |
1 |
ctcacattgatggtcttccctttggtgctgaaacatcttcagatgt |
46 |
Q |
| |
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|||||||| |||||||||| |||||||||||||| |||||||||| |
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|
| T |
35036855 |
ctcacattcatggtcttccatttggtgctgaaaccacttcagatgt |
35036810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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