View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3823_low_8 (Length: 475)
Name: NF3823_low_8
Description: NF3823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3823_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 22 - 462
Target Start/End: Original strand, 2706411 - 2706846
Alignment:
| Q |
22 |
gggggagggaaaaatactgagaaagaaataaagggaaggatgggaactatagcgttggtggaagagagatggttagggaaatatattgcaggctcttcta |
121 |
Q |
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| T |
2706411 |
gggggaggaaaaaatattgagaaagaaataaagggaaggacgggaactatagcgttggtggaagagagatggttagggaaatatttttcaggctcttcta |
2706510 |
T |
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| Q |
122 |
atggtttgtttgttaggttggctcataactctattatcatcaaattcacatgacaaaattattttttgaagtaattttctctgcaaattggagtttcagc |
221 |
Q |
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| T |
2706511 |
atggtttgtttgttaggtttgctcataattctactatcatcaaattcacatgacaaaattatttttttaagtaattttctctgcaaactggagtttcggc |
2706610 |
T |
|
| Q |
222 |
atttctttagtatgttttactaagaggcccccttttaaacgttgcatcannnnnnnnngttcatttgatcataccaacatttgtctcatcaagttcattt |
321 |
Q |
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| T |
2706611 |
atttctttagtatgttttactaagaggctcccttttaaaccttgcat-ttttttttttgttcatttgatcataccaacatttgtctcatcaagttcattt |
2706709 |
T |
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| Q |
322 |
catatgcctccttttatcaatcggatacgtgttgtaatattgttaaatagatagagtacacaccagttttttccagttgaggaatgaatgtgaaagaaat |
421 |
Q |
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| T |
2706710 |
c--atgcctccttttaccaatcggatacgtgttgtaatattgtgaaatagatagagtacacaccag--ttttccagttgagggatgaatgtgaaagaaat |
2706805 |
T |
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| Q |
422 |
tcgtcctagtgcatattttctcaaaggaaaagagatagcct |
462 |
Q |
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| T |
2706806 |
tcgtcctggtgcagattttctcaaaggaaaagagatagcct |
2706846 |
T |
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Back To:
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Target: chr8 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 14764336 - 14764221
Alignment:
| Q |
20 |
aggggggagggaaaaatactgagaaagaaataaagggaaggatgggaactatagcgttggtggaagagagatggttagggaaatatattgcaggctcttc |
119 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
14764336 |
aggggggagggaaaaatattgagaaagaaataaagggaaggatgggaactataacgatggtggaagagagatggttagggaaatattttgcaggcccttc |
14764237 |
T |
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| Q |
120 |
taatggtttgtttgtt |
135 |
Q |
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|||||||||||||||| |
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| T |
14764236 |
taatggtttgtttgtt |
14764221 |
T |
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