View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3824_high_3 (Length: 289)
Name: NF3824_high_3
Description: NF3824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3824_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 13 - 274
Target Start/End: Complemental strand, 30860593 - 30860332
Alignment:
| Q |
13 |
agcaaaggattttataatttatttgaataaattttggcaagttggtccacaatctcttgctcatcttattaacaaccttaatgctagaaacgaccatgtt |
112 |
Q |
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| T |
30860593 |
agcaaaggattttataatttatttgaataaattttggcaagttggtccacaatctcttgctcatcttattaacaaccttaatgctagaaacgaccatgtt |
30860494 |
T |
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| Q |
113 |
gattgtcttatttatgattcattcatgccttggtgcttagatgttgcaaaggaatttggaattgttggtgcttcttttctaactcaaaatcttgctatga |
212 |
Q |
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| T |
30860493 |
gattgtcttatttatgattcattcatgccttggtgcttagatgttgcaaagaaatttggaattgttggtgcttcttttctaactcaaaatcttgctatga |
30860394 |
T |
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| Q |
213 |
atagtatatactatcatgttcatttgggaaagttgaaacctccctttgctgagcaagagatt |
274 |
Q |
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| T |
30860393 |
atagtatatactatcatgttcatttgggaaagttgaaacctccctttgctgagcaagagatt |
30860332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 274
Target Start/End: Complemental strand, 30818584 - 30818323
Alignment:
| Q |
13 |
agcaaaggattttataatttatttgaataaattttggcaagttggtccacaatctcttgctcatcttattaacaaccttaatgctagaaacgaccatgtt |
112 |
Q |
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| T |
30818584 |
agcaaaggattttaaattgtatttgaataaattttggcaagttggtccacaatctcttgctcatcttattaacaaccttaatgctagaaacgaccatgtt |
30818485 |
T |
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| Q |
113 |
gattgtcttatttatgattcattcatgccttggtgcttagatgttgcaaaggaatttggaattgttggtgcttcttttctaactcaaaatcttgctatga |
212 |
Q |
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| T |
30818484 |
gattgtcttatttatgattcattcatgccttggtgcttagatgttgcaaaggaatttggaattgttggtgcttcttttctaacacaaaatcttgttatga |
30818385 |
T |
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| Q |
213 |
atagtatatactatcatgttcatttgggaaagttgaaacctccctttgctgagcaagagatt |
274 |
Q |
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| T |
30818384 |
atagtatatactatcatgttcatttgggaaagttgaaacctccctttgttgaacaagagatt |
30818323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 235
Target Start/End: Complemental strand, 30841573 - 30841448
Alignment:
| Q |
110 |
gttgattgtcttatttatgattcattcatgccttggtgct-tagatgttgcaaaggaatttggaattgttggtgcttcttttctaactcaaaatcttgct |
208 |
Q |
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| T |
30841573 |
gttgattgtgttatttatgattcattttttccttgg-gctcttgatgttgctaagagatttggaattgttggtgttacttatctcactcaaaatatgtca |
30841475 |
T |
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| Q |
209 |
atgaatagtatatactatcatgttcat |
235 |
Q |
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| T |
30841474 |
gtgaatagtatttactatcatgttcat |
30841448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 30847964 - 30847840
Alignment:
| Q |
110 |
gttgattgtcttatttatgattcattcatgccttggtgct-tagatgttgcaaaggaatttggaattgttggtgcttcttttctaactcaaaatcttgct |
208 |
Q |
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| T |
30847964 |
gttgattgtgttatttataattcattttttccttgg-gctcttgatgttgctaagagatttggaattgttggtgtttcttatctcactcaaaatatgttg |
30847866 |
T |
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| Q |
209 |
atgaatagtatatactatcatgttca |
234 |
Q |
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|||||||||| |||||||||||||| |
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| T |
30847865 |
gtgaatagtatttactatcatgttca |
30847840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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