View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3824_low_2 (Length: 337)
Name: NF3824_low_2
Description: NF3824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3824_low_2 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 30860570 - 30860909
Alignment:
| Q |
1 |
aaataaattataaaatcctttgcttcagcaactccacctttgtcaaaaccatcagaaatggtctcaactgtaatggaattaggtggcaatttagctatgt |
100 |
Q |
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| T |
30860570 |
aaataaattataaaatcctttgcttcagcaactccacctttgtcaaaaccatcagaaatggtctcaactgtaatggaattaggtggcaatttaggtatgt |
30860669 |
T |
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| Q |
101 |
tgttgtagttggaaatggtggtgacaagtgttactttgactccttcttgttgttgtaaaagcttggagaattctaacattggattagtgtgaccatgtgc |
200 |
Q |
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| T |
30860670 |
tgttgtagttggaaatggtggtgacaagtgttactttgactccttctcgttgttgtaaacgcttggagaattctaacattggattagtgtgaccatgtgc |
30860769 |
T |
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| Q |
201 |
tggaaatggcaacaccaaacaatggacactcttggtggatatgattttgttctccatatttcacaaattctcttga---tggtggggtgggaagatgagg |
297 |
Q |
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| T |
30860770 |
tggaaatggcaacaccaaacaatggacactcttggtggatatgattttgttctccatatttcacaaattctcttgatggtggtggggtgggaagatgagg |
30860869 |
T |
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| Q |
298 |
gtttgatctgtggaacttatggtcactatgaggcactgtc |
337 |
Q |
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| T |
30860870 |
gtttgatctgtggaacttatggtcactatgaggcactgtc |
30860909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 30818571 - 30818817
Alignment:
| Q |
11 |
taaaatcctttgcttcagcaactccacctttgtcaaaaccatcagaaatggtctcaactgtaatggaattaggtggcaatttagctatgttgttgtagtt |
110 |
Q |
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| T |
30818571 |
taaaatcctttgcttcagcaactccacctttgtcaaaaccatcagaaatggtctcaatcgtaatggaattatttggcaatttaggtatgtttttgtagtt |
30818670 |
T |
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| Q |
111 |
ggaaatggtggtgacaagtgttactttgactccttcttgttgttgtaaaagcttggagaattctaacattggattagtgtgaccatgtgctggaaatggc |
210 |
Q |
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| T |
30818671 |
ggaaatggtggtgacaagtgttactttgactccttcttgttgttgtaaaagcttggagaattctaacattggattagtgtgaccatgtgctggaaatggc |
30818770 |
T |
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| Q |
211 |
aacaccaaacaatggacactcttggtggatatgattttgttctccat |
257 |
Q |
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| T |
30818771 |
aacaccaaacaatgaacactcttggtggatatggttttattctccat |
30818817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 30856503 - 30856577
Alignment:
| Q |
150 |
ttgttgtaaaagcttggagaattctaacattggattagtgtgaccatgtgctggaaatggcaacaccaaacaatg |
224 |
Q |
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| T |
30856503 |
ttgttgtaaaagcttggagaattgtagcatgggattaatgtgaccttgagctggaaatgataagaccaaacaatg |
30856577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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