View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3825_high_10 (Length: 433)
Name: NF3825_high_10
Description: NF3825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3825_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 3 - 417
Target Start/End: Original strand, 35318741 - 35319153
Alignment:
| Q |
3 |
aagaatttcttattaaggaccacaaagattgaatcgataaaatattgaaatgatcaagaactcaaatcgctaatgataatcaagaacccacatataaaga |
102 |
Q |
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| T |
35318741 |
aagaatttcttattaaggaccacaaagattgaatcgataaaatatcgaaatgatcaagaactcaaattgctaatgataatcgagaacccacatataaaga |
35318840 |
T |
|
| Q |
103 |
gtatttttgctcttgataaagannnnnnnnnnnnnnnnatcaaggacnnnnnnnntgtttattcacatatattcaattataatctaccacgtaaataatt |
202 |
Q |
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| T |
35318841 |
gtatttttactcttgataaagatattttttttttt---atcaaggacaaaaaaa-tgtttattcacatatattcaattataatctaccacgtaaataatt |
35318936 |
T |
|
| Q |
203 |
gtgaaaatannnnnnnnn---gaaggaataaaaatannnnnnnnngaaagatgaaggaatgaaaatatgttatcaattaaatcgctaatgtggtattttt |
299 |
Q |
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||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35318937 |
gtgaaaatatgttttttttttgaaggaatgaaaatatttttttt-gaaagatgaaggaatgaaaatatgttatcaattaaatcgctaatgtggtattttt |
35319035 |
T |
|
| Q |
300 |
gtgaaccatggggnnnnnnntttcatccctgacgttgacggcaccttgtcgtcaagctgaattgttcaaatgcaccgtctatcgtcttcttaggaaaggg |
399 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35319036 |
gtgaaccatggggaaaaaaatttcatccctgacgttgacggcaccttgtcgtcaagctgaattgttcaaatgcaccgtctatcgtcttcttaggaaaggg |
35319135 |
T |
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| Q |
400 |
ataccctaacgtactatc |
417 |
Q |
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|||||||||||||||||| |
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| T |
35319136 |
ataccctaacgtactatc |
35319153 |
T |
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