View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3825_high_13 (Length: 403)
Name: NF3825_high_13
Description: NF3825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3825_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 4922307 - 4921926
Alignment:
| Q |
1 |
aataaaaggcaagaagaacataaagagaggcaagggaatcgagaattggacattttaggcgatccctagaaaatactcatcgacaaaaggtaaggtgtgt |
100 |
Q |
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| T |
4922307 |
aataaaaggcaagaagaacataaagagaggcaagggaatcgagaattggacattttaggcgatccctagaaaatactcatcgacaaaaggtaaggtgtgt |
4922208 |
T |
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| Q |
101 |
agaggttacccatcaaaattgacattaataaaaataatttatttgccttcctattgttgatggataaataagaatgcaccataaaaatagtttaataaaa |
200 |
Q |
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| T |
4922207 |
agaggttacccatcaaaattgacattaataaaaataatttatttgccttcctattattgatggataaataagaatgcaccataaaaatagtttaataaaa |
4922108 |
T |
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| Q |
201 |
tttaacactttaccacaaatcgtgttgacttcaattggttttgactccgattttgaaagcttcccttgtaaggataatccaaattgcgagagttttggtg |
300 |
Q |
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| T |
4922107 |
tttaacactttaccacaaatcgcgttgacttcaattggttttgactccgattttgaaagcttcccttgtaaggataatccaaattgcgagagttttggtg |
4922008 |
T |
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| Q |
301 |
ccatattgttatccaaaagaatgctgtaaggctttacgtcacggtggaaaatcgggcgctttgctccagtgtgaaggtagtg |
382 |
Q |
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| T |
4922007 |
ccatattgttatccaaaagaatgctgtaaggctttacgtcacggtggaaaatcgggcgctttgctccagtgtgaaggtagtg |
4921926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 227 - 384
Target Start/End: Complemental strand, 4928322 - 4928165
Alignment:
| Q |
227 |
gacttcaattggttttgactccgattttgaaagcttcccttgtaaggataatccaaattgcgagagttttggtgccatattgttatccaaaagaatgctg |
326 |
Q |
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| T |
4928322 |
gactacaattggtattgactccgatttagaaagcttcccttgtaaggataatccaaattgcgagagttttggtgccatattgttatccaaaagaatgttc |
4928223 |
T |
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| Q |
327 |
taaggctttacgtcacggtggaaaatcgggcgctttgctccagtgtgaaggtagtgta |
384 |
Q |
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| T |
4928222 |
tgtggaattacgtcacggtggaaaatcggacgctttgttccagtgtgaagatagtgta |
4928165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 223 - 384
Target Start/End: Original strand, 4907890 - 4908051
Alignment:
| Q |
223 |
tgttgacttcaattggttttgactccgattttgaaagcttcccttgtaaggataatccaaattgcgagagttttggtgccatattgttatccaaaagaat |
322 |
Q |
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| T |
4907890 |
tgttgacttcaactggttttggcttagagttaggaagcttcccttgtaaggaaaatccaagatgcgagagttttggtaccatattcttatctaaaagaat |
4907989 |
T |
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| Q |
323 |
gctgtaaggctttacgtcacggtggaaaatcgggcgctttgctccagtgtgaaggtagtgta |
384 |
Q |
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| T |
4907990 |
ggtttgaggctttatgtcacagtgaaaaattgcgcgctttgctccagtgtgaaggtagtgta |
4908051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 255 - 384
Target Start/End: Complemental strand, 5822331 - 5822202
Alignment:
| Q |
255 |
gaaagcttcccttgtaaggataatccaaattgcgagagttttggtgccatattgttatccaaaagaatgctgtaaggctttacgtcacggtggaaaatcg |
354 |
Q |
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||||||||||||||||| || ||||||| || |||||||||||| ||||||| ||||| ||||||||| | | ||| |||| ||||| || |||| || |
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| T |
5822331 |
gaaagcttcccttgtaaagaaaatccaagatgtgagagttttggtaccatattcttatctaaaagaatggtttgaggttttatgtcacaatgaaaaaccg |
5822232 |
T |
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| Q |
355 |
ggcgctttgctccagtgtgaaggtagtgta |
384 |
Q |
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| T |
5822231 |
tgcgctttgttccagtgtgaaggtagtgta |
5822202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 384
Target Start/End: Original strand, 4903992 - 4904127
Alignment:
| Q |
249 |
gattttgaaagcttcccttgtaaggataatccaaattgcgagagttttggtgccatattgttatccaaaagaatgctgtaaggctttacgtcacggtgga |
348 |
Q |
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||||| ||| ||||| |||| ||||| | ||||| ||| | |||||||||| |||| |||||||| |||||||| | | |||||||| |||| ||| | |
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| T |
4903992 |
gatttagaacgcttctcttgcaaggaaattccaagttgtgcgagttttggtaccattttgttatctaaaagaattgtttgaggctttatatcacagtgaa |
4904091 |
T |
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| Q |
349 |
aaatcgggcgctttgctccagtgtgaaggtagtgta |
384 |
Q |
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| T |
4904092 |
aaattgcgcgctttgctccggtgtgaagatagtgta |
4904127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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