View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3825_high_14 (Length: 399)
Name: NF3825_high_14
Description: NF3825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3825_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 10 - 384
Target Start/End: Original strand, 55077647 - 55078022
Alignment:
| Q |
10 |
gcaaaggcattgttaaaaagaagaaaggatatgctttccatatacnnnnnnnnnnnnnnnn---gacaagaaatcagtgtttagtgccaatcaaattaac |
106 |
Q |
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| T |
55077647 |
gcaaaggcattgttaaaaagaagaaaggatatgctttccatatacaaaaaaaaaaaaaaaaaaagacaagaaatcagtatttagtgccaatcaaattaac |
55077746 |
T |
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| Q |
107 |
atttgtgtttaaacaatatttaaaaataaaaatagcacgggttgaacagttaccatgccgacgaacagcgacaagaccagtcatgggatcaatgaagact |
206 |
Q |
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| T |
55077747 |
atttgtgtttaaac--tatttaaaaataaaaatagcacgggttgaacagttaccatgccgacgaacagcgacaagaccagtcatgggatcaatgaagact |
55077844 |
T |
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| Q |
207 |
ttggtcacggggttccctccacatacaagattgaactacaataaacaatggattatttattatcaggagataaggatgcaattgtgaaggttgagatggt |
306 |
Q |
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| T |
55077845 |
ttggtcatggggttccctccacatacaagattgaactacaataaacaatggattatttattatcaggagataaggatgcaattgtgaaggttgagatggt |
55077944 |
T |
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| Q |
307 |
aagcattttagctagagaaatgcatgaatagattagatgcattaaagtaggtatagacaagacaattagggaatagaa |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55077945 |
aagcattttagctagagaaatgcatgaatagattagatgcattaaagtaggtatagacaagacaattagggaatagaa |
55078022 |
T |
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