View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3825_high_17 (Length: 362)
Name: NF3825_high_17
Description: NF3825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3825_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 5655011 - 5655358
Alignment:
| Q |
1 |
aaggacactgagtatggtgatttttctgaaccatccaacacaatttcaaataagtcagcttcagactcttcatcaaaatcaaatgctagattgttattat |
100 |
Q |
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| T |
5655011 |
aaggacactgagtatggtgatttttctgaaccatccaacacaatttcaaataagtcagcttcagactcttcatcaaaatcaaatgctagattgttattat |
5655110 |
T |
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| Q |
101 |
tcacattgatgtgattttcttttgttgccgatcgattctgccacggagaatcaatccttcccatggagaatagttccttactgtcatcaaatccaagtgc |
200 |
Q |
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| T |
5655111 |
tcacattgatgtgattttcttttgttgccgatcgattctgccacggagaatcaatccttcccatggagaatagttccttactgtcatcaaatccaagtgc |
5655210 |
T |
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| Q |
201 |
tgcaccaggggaatgtacaagtggtgctatgaagcatggatttggtgttctttgtgcatttgcaggagcatatttgaatgcaatttgtccaaaattaact |
300 |
Q |
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| T |
5655211 |
agcaccaggggaatgtacaagtggtgctatgaagcatggatttggtgttctttgtgcatttgcaggagcatatttgaatgcaatttgtccaaaattaact |
5655310 |
T |
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| Q |
301 |
aaaaccataatgtctatatttgcagccaaagttggacataatggagtg |
348 |
Q |
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| T |
5655311 |
aaaaccataatgtctatatttgcagccaaagttggacataatggagtg |
5655358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 216 - 348
Target Start/End: Complemental strand, 47049268 - 47049136
Alignment:
| Q |
216 |
tacaagtggtgctatgaagcatggatttggtgttctttgtgcatttgcaggagcatatttgaatgcaatttgtccaaaattaactaaaaccataatgtct |
315 |
Q |
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| T |
47049268 |
tacaagtggtgatacaaggcatggatttggtgttctttgagcatttgctggtgcatatttaaatgcattttgtccaaaattgaccaataccataatgtct |
47049169 |
T |
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| Q |
316 |
atatttgcagccaaagttggacataatggagtg |
348 |
Q |
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| T |
47049168 |
atattagcagctaatgttggatacaatggagtg |
47049136 |
T |
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