View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3825_high_22 (Length: 303)
Name: NF3825_high_22
Description: NF3825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3825_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 32539312 - 32539027
Alignment:
| Q |
1 |
tgaaaaaattgtcttttatatatctttcaacgtagtcactgaggatactaaccaatgctctgattgcaacttcgttcaaaggtggtccttctcttcttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32539312 |
tgaaaaaattgtcttttatatatctttcaacgtagtcactgaggatactaaccaatgctctgattgcaacttcgttcaaaggtggtccttctcttcttga |
32539213 |
T |
|
| Q |
101 |
atccggtgaaaccaatgacttcgaattcgatgtttcctcggctgaagtacaaaccctttcattgtttgtttgaaataagtcaaatgaaaaagaccctttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
32539212 |
atccggtgaaaccaatgacttcgaattcgatgtttcctcggctgaagtacaaaccctttcattgttagtttgaaataagtcatatgaaaaagaccctttt |
32539113 |
T |
|
| Q |
201 |
tgtatcatagcctcatctaacttctggtcgaagcaatcaatgannnnnnnatcatggtagatttgtaaaggtaaagggagtgatgt |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
32539112 |
tgtatcatagcctcatctaacttctggtcgaagcaatcgatgatttttttatcatggtagatttgtaaaggtaaagggagtgatgt |
32539027 |
T |
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