View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3825_high_24 (Length: 286)
Name: NF3825_high_24
Description: NF3825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3825_high_24 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 12 - 272
Target Start/End: Complemental strand, 36633754 - 36633494
Alignment:
| Q |
12 |
aatactcaagcaatgtgagacttttttgtgtccggaacatataataattagaatactataagaaatttcaagaaaggattagaaatttacttaagaagtc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36633754 |
aatactcaagcaatgtgagacttttttgtgtccggaacatataataattagaatactataagaaatttcaagaaaggattagaaatttacttaagaagtc |
36633655 |
T |
|
| Q |
112 |
aacaatgagacggccatcgcagaatctcccagctggagctttgaagtaattttgtccgttgggtggggcgggttgaaagcccttggctgcacaaagttca |
211 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36633654 |
aacaatgagacggccatcgctgaatctcccggctggagctttgaagtaattttgtccgttgggtggggcgggttgaaagcccttggctgcacaaagttca |
36633555 |
T |
|
| Q |
212 |
cctgtgtctgaatttgaatcaccaaagttgaaaactgctgggtaactgaagtgaacagaat |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36633554 |
cctgtgtctgaatttgaatcaccaaagttgaaaactgctgggtaactgaagtgaacagaat |
36633494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 272
Target Start/End: Complemental strand, 36638102 - 36637903
Alignment:
| Q |
77 |
tttcaagaaaggattagaaatttacttaagaagtcaacaatgagacggccat--cgcagaatctcccagctggagctttgaagtaattttgtccgttggg |
174 |
Q |
| |
|
||||| ||||||||| ||| |||||||| ||||||| ||||||||||||| | ||||||||||||| |||| |||||||| ||| ||||||| || |
|
|
| T |
36638102 |
tttcacgaaaggatttaaaacttacttaaaaagtcaagtatgagacggccatatcacagaatctcccagacggagttttgaagtgattctgtccgtaagg |
36638003 |
T |
|
| Q |
175 |
tggggcggg--ttgaaagcccttggctgcacaaagttcacctgtgtctgaatttgaatcaccaaagttgaaaactgctgggtaactgaagtgaacagaat |
272 |
Q |
| |
|
|| || ||| | ||| ||| |||||| | || ||||||| ||||| |||||||||||||||||||| ||||||| |||||||||| |||||||| |
|
|
| T |
36638002 |
tgtggggggagtggaaggccaaacgctgcaacacgtccacctgtatctgaggttgaatcaccaaagttgaaagctgctggataactgaagtcaacagaat |
36637903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 46939438 - 46939485
Alignment:
| Q |
205 |
aagttcacctgtgtctgaatttgaatcaccaaagttgaaaactgctgg |
252 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
46939438 |
aagttcacctgtgtccgaatttgaatcacctaagttgaaaactgctgg |
46939485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 252
Target Start/End: Original strand, 46938346 - 46938377
Alignment:
| Q |
221 |
gaatttgaatcaccaaagttgaaaactgctgg |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
46938346 |
gaatttgaatcaccaaagttgaaaactgctgg |
46938377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University