View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3825_high_25 (Length: 285)
Name: NF3825_high_25
Description: NF3825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3825_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 33530160 - 33529880
Alignment:
| Q |
1 |
ctatgaaatgttgataagagaaaagccaggcgatgaggaggttgctagggctttgtttgaaatccaactaaaactcaaaatgctacgcggcgaagatgtt |
100 |
Q |
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| T |
33530160 |
ctatgaaatgttgataagagaaaagccaggcgatgaggaggttgctagggctttgtttgaaatccaactaaaactcaaaatgctacgcggcgaagatgtt |
33530061 |
T |
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| Q |
101 |
aaggacttgaaatttggttcaaatttggtttgcatctcaagcaatgataggtttagacattatgtaacttcacctggtaagtcatgtttgattccatatt |
200 |
Q |
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| T |
33530060 |
aaggacttgaaatttggttcaaatttggtttgcatctcaagtaatgataggtttagacattatgtaacttcacctggtaagtcatgtttgattccatatt |
33529961 |
T |
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| Q |
201 |
atatgcaatcgaatttaaacattatgacacaacaaaaacttatcagttgtggataaattaacaggtatgtctgtgctgctc |
281 |
Q |
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| T |
33529960 |
atatgcaatcaaatttaaacattatgacacaacaaaaacttatcagttgtggataaattaacaggtatgtctgtggtgctc |
33529880 |
T |
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Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 181
Target Start/End: Complemental strand, 26207732 - 26207556
Alignment:
| Q |
5 |
gaaatgttgataagagaaaagccaggcgatgaggaggttgctagggctttgtttgaaatccaactaaaactcaaaatgctacgcggcgaagatgttaagg |
104 |
Q |
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|||||||||||||||||||||||||| ||||| || || || |||||||||||||| | || ||||||| |||||||| || |||||| |||||| |
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| T |
26207732 |
gaaatgttgataagagaaaagccaggggatgaagaagtggcaagggctttgtttgaggctcggctccaactcaagatgctacgtggtgaagatattaagg |
26207633 |
T |
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| Q |
105 |
acttgaaatttggttcaaatttggtttgcatctcaagcaatgataggtttagacattatgtaacttcacctggtaag |
181 |
Q |
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| T |
26207632 |
atttaaaatttggttcaaatttggttttcatctcaagtaatgatcgtttcagacattatgtaacctcgcctggtaag |
26207556 |
T |
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