View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3825_high_32 (Length: 265)
Name: NF3825_high_32
Description: NF3825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3825_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 51858299 - 51858087
Alignment:
| Q |
1 |
ctaacgcattagatgggaatgtgtgtgagatgtgattgttagtcaaaatatctaagtgacgaagtttgctagatttcgaagttggcaacaatggttgtgt |
100 |
Q |
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| T |
51858299 |
ctaacacattagatgggaatgtgtgtgagatgtgattgttagtcaaaatatctaagtgacgaagtttgctagatttcgaagttggcaacaatggttgtgt |
51858200 |
T |
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| Q |
101 |
gcgaaatattttggtttcggtgagtagcaaaaacttagcagcttgaatatgaagtctatgaaaaggaggggaaagaatagagcgccataaagcacagaca |
200 |
Q |
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| T |
51858199 |
gcgaaatattttggtttcggtgagtagcaaaaacttagcagcttgaatatgaagtctatgaaaaggaggggaaagaatagagcgccataaagcacaggca |
51858100 |
T |
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| Q |
201 |
ctacggaatcgaa |
213 |
Q |
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| T |
51858099 |
ctacggaatcgaa |
51858087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 80 - 215
Target Start/End: Original strand, 34865308 - 34865455
Alignment:
| Q |
80 |
agttggcaacaatggttgtgtgcgaaatattttggtttcggtgagtagcaaaaacttagcagcttgaatatgaagtctatga------------aaagga |
167 |
Q |
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| T |
34865308 |
agttggaaataatggttgtaggcgaaatattttggtttcggtgaaaagcaaaaacttaccatctggaatgcgaagtgtatgagaaggagaaggaaaagga |
34865407 |
T |
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| Q |
168 |
ggggaaagaatagagcgccataaagcacagacactacggaatcgaaga |
215 |
Q |
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| T |
34865408 |
gggggaagaatagagcgcaataaagcacagacactacggaatcgaaga |
34865455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 34865190 - 34865268
Alignment:
| Q |
1 |
ctaacgcattagatgggaatgtgtgtgagatgtgattgttagtcaaaatatctaagtgacgaagtttgctagatttcga |
79 |
Q |
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| T |
34865190 |
ctaacacattagacgggaaagtgtgtgacatatgagtgttagttacaacatctaagtgacgaagtttgccagatttcga |
34865268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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