View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3825_high_36 (Length: 250)
Name: NF3825_high_36
Description: NF3825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3825_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 161 - 240
Target Start/End: Complemental strand, 13980299 - 13980220
Alignment:
| Q |
161 |
aaaacactaattaactcgccatctttgaatagaatacattttttgatagtgggggctacttgaccctccccatacctatg |
240 |
Q |
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| T |
13980299 |
aaaacactaattaactcgccatctttaaatagaatacattttttgatagtggggactacttgaccctccccatacctatg |
13980220 |
T |
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Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 13980480 - 13980414
Alignment:
| Q |
31 |
gtggcaatttttgtcaaacttagccaatatatacaaaatatgctttcaaatagttaaattagaactt |
97 |
Q |
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| T |
13980480 |
gtggcaatttttgtcaaacttagctaatatatacaaaatatgctttcaaatagttaaattaaaactt |
13980414 |
T |
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