View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3825_high_42 (Length: 239)
Name: NF3825_high_42
Description: NF3825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3825_high_42 |
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Alignment Details
Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 80 - 229
Target Start/End: Original strand, 36332726 - 36332875
Alignment:
| Q |
80 |
aagtactttagtggttagaaattcacctcttaagatgaatatatgtggtatttaaggttcaaaccccaacctctgcatataaaatgtaacatctttatca |
179 |
Q |
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| T |
36332726 |
aagtactttagtggttagaaatttaccttttaagataaatatacgtggtatctaaggttcgaacctcaacctctgcatataaaatgtaacatttttatca |
36332825 |
T |
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| Q |
180 |
atcgaactaagcttacggggactccatttttacacttatatccacctttg |
229 |
Q |
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| T |
36332826 |
atcgaactaagctcacgggaactccgtttttacacttatatccacctttg |
36332875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 36332639 - 36332683
Alignment:
| Q |
1 |
tctaaatagaatcattcaagcaattcaccttaaaattcttacata |
45 |
Q |
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| T |
36332639 |
tctaaatagaatcattcaagcaattcaccttaaaattcttacata |
36332683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 128
Target Start/End: Original strand, 26123453 - 26123486
Alignment:
| Q |
95 |
tagaaattcacctcttaagatgaatatatgtggt |
128 |
Q |
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| T |
26123453 |
tagaaattcacctcttaagatgaataaatgtggt |
26123486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 36862342 - 36862381
Alignment:
| Q |
80 |
aagtactttagtggttagaaattcacctcttaagatgaat |
119 |
Q |
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| T |
36862342 |
aagtattttagtggctagaaattcacctcttaagatgaat |
36862381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 119
Target Start/End: Complemental strand, 40444053 - 40444025
Alignment:
| Q |
91 |
tggttagaaattcacctcttaagatgaat |
119 |
Q |
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| T |
40444053 |
tggttagaaattcacctcttaagatgaat |
40444025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 44347278 - 44347326
Alignment:
| Q |
152 |
ctgcatataaaatgtaacatctttatcaatcgaactaagcttacgggga |
200 |
Q |
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| T |
44347278 |
ctgcatataaaatgttatatccctatcaattgaactaagcttacgggga |
44347326 |
T |
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