View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3825_high_46 (Length: 236)
Name: NF3825_high_46
Description: NF3825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3825_high_46 |
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Alignment Details
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 11786490 - 11786604
Alignment:
| Q |
1 |
cgtaactccccacaccactatctctaaagtatctacatctttccttcatgctgaacaaa-tctcccatattaatgcggatatttactcaccaaaactcta |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11786490 |
cgtaactccccacaccactatctctaaagtatctacatctttccttcatgctgcacaaaatctcccatattaatgcggatatttactcaccaaaactcta |
11786589 |
T |
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| Q |
100 |
aacctcaaactgttt |
114 |
Q |
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||||||||||||||| |
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| T |
11786590 |
aacctcaaactgttt |
11786604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 11798657 - 11798771
Alignment:
| Q |
1 |
cgtaactccccacaccactatctctaaagtatctacatctttccttcatgctgaacaaa-tctcccatattaatgcggatatttactcaccaaaactcta |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11798657 |
cgtaactccccacaccactatctctaaagtatctacatctttccttcatgctgcacaaaatctcccatattaatgcggatatttactcaccaaaactcta |
11798756 |
T |
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| Q |
100 |
aacctcaaactgttt |
114 |
Q |
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||||||||||||||| |
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| T |
11798757 |
aacctcaaactgttt |
11798771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 11786651 - 11786756
Alignment:
| Q |
114 |
taaatgtattagaatgaagccagcctcgtcgttttctcaacacactttgtctcaatgtatcaaattatttttaaattttaaaaaagcactatattagaat |
213 |
Q |
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|||||||||||||||||||||| |||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11786651 |
taaatgtattagaatgaagccaccctcatcgttttctcgacacactttttctcaatgtatcaaattatttttaaattttaaaaaagcactatattagaat |
11786750 |
T |
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| Q |
214 |
gaaccc |
219 |
Q |
| |
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|||||| |
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| T |
11786751 |
gaaccc |
11786756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 11798818 - 11798923
Alignment:
| Q |
114 |
taaatgtattagaatgaagccagcctcgtcgttttctcaacacactttgtctcaatgtatcaaattatttttaaattttaaaaaagcactatattagaat |
213 |
Q |
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|||||||||||||||||||||| |||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11798818 |
taaatgtattagaatgaagccaccctcatcgttttctcgacacactttttctcaatgtatcaaattatttttaaattttaaaaaagcactatattagaat |
11798917 |
T |
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| Q |
214 |
gaaccc |
219 |
Q |
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|||||| |
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| T |
11798918 |
gaaccc |
11798923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 11786742 - 11786823
Alignment:
| Q |
120 |
tattagaatgaagccagcctcgtcgttttctcaacacactttgtctcaatgtatcaaattatttttaaattttaaaaaagca |
201 |
Q |
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|||||||||||| ||| |||| || ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11786742 |
tattagaatgaacccaccctcatctttttctcgacacactttgtctcaatgtatcaaattatttttaaatttaaaaaaagca |
11786823 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 11798909 - 11798990
Alignment:
| Q |
120 |
tattagaatgaagccagcctcgtcgttttctcaacacactttgtctcaatgtatcaaattatttttaaattttaaaaaagca |
201 |
Q |
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|||||||||||| ||| |||| || ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11798909 |
tattagaatgaacccaccctcatctttttctcgacacactttgtctcaatgtatcaaattatttttaaatttaaaaaaagca |
11798990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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