View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3825_high_48 (Length: 227)

Name: NF3825_high_48
Description: NF3825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3825_high_48
NF3825_high_48
[»] chr5 (2 HSPs)
chr5 (1-113)||(4292038-4292148)
chr5 (1-74)||(16158578-16158651)
[»] chr8 (2 HSPs)
chr8 (1-48)||(26125518-26125565)
chr8 (1-48)||(43550837-43550884)
[»] chr3 (5 HSPs)
chr3 (1-72)||(53179763-53179834)
chr3 (1-48)||(14959657-14959704)
chr3 (1-48)||(20813084-20813131)
chr3 (1-48)||(35930676-35930723)
chr3 (1-57)||(35425263-35425319)
[»] chr1 (1 HSPs)
chr1 (1-72)||(12468151-12468222)
[»] scaffold0369 (1 HSPs)
scaffold0369 (1-72)||(8363-8434)
[»] chr7 (1 HSPs)
chr7 (1-48)||(12632186-12632233)
[»] chr6 (2 HSPs)
chr6 (1-48)||(16548077-16548124)
chr6 (1-48)||(33899121-33899168)
[»] chr4 (3 HSPs)
chr4 (1-52)||(14072422-14072473)
chr4 (1-48)||(16566228-16566275)
chr4 (1-47)||(39636709-39636755)
[»] chr2 (2 HSPs)
chr2 (1-48)||(5916355-5916402)
chr2 (1-48)||(36312224-36312271)


Alignment Details
Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 4292148 - 4292038
Alignment:
Q  1 atcaaaattgattttgaatgtgtaacgactaatatatctttttaattgaaaccaaattatctaatactccaaaacccaatagtnnnnnnnttcctgccaa 100  Q
    ||||||||| ||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||       ||||||||||    
T  4292148 atcaaaattaattttgaatgtgtaatgactgatatatctttt-aattgaaaccaaattatctaatactccaaaacccaatagt-aaaaaattcctgccaa 4292051  T
Q  101 ctatagcaaccag 113  Q
    |||||||||||||    
T  4292050 ctatagcaaccag 4292038  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 16158578 - 16158651
Alignment:
Q  1 atcaaaattgattttgaatgtgtaacgactaatatatctttttaattgaaaccaaattatctaatactccaaaa 74  Q
    ||||||||||||||||||||||||| ||  || ||||  |||||||| |||| |||||||||||||||||||||    
T  16158578 atcaaaattgattttgaatgtgtaatgatcaaaatattcttttaattaaaacgaaattatctaatactccaaaa 16158651  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 26125565 - 26125518
Alignment:
Q  1 atcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 48  Q
    ||||||||||||||||||||||||| ||| || |||||||||||||||    
T  26125565 atcaaaattgattttgaatgtgtaatgacgaaaatatctttttaattg 26125518  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 43550884 - 43550837
Alignment:
Q  1 atcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 48  Q
    ||||||||||||||||||||||||| ||||||  |||| |||||||||    
T  43550884 atcaaaattgattttgaatgtgtaaagactaaactatccttttaattg 43550837  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 53179834 - 53179763
Alignment:
Q  1 atcaaaattgattttgaatgtgtaacgactaatatatctttttaattgaaaccaaattatctaatactccaa 72  Q
    |||||||||||||||||||||  || ||| ||  |||| |||||||| ||||||||||||| ||||||||||    
T  53179834 atcaaaattgattttgaatgtacaatgaccaaattatccttttaattaaaaccaaattatcaaatactccaa 53179763  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 14959704 - 14959657
Alignment:
Q  1 atcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 48  Q
    |||||| ||||||||||||||||||||| |||  ||||||||||||||    
T  14959704 atcaaacttgattttgaatgtgtaacgattaaattatctttttaattg 14959657  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 20813131 - 20813084
Alignment:
Q  1 atcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 48  Q
    ||||||||||||||||||||||||| ||||||  |||| |||||||||    
T  20813131 atcaaaattgattttgaatgtgtaatgactaaactatccttttaattg 20813084  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 35930723 - 35930676
Alignment:
Q  1 atcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 48  Q
    ||||||||||||||||||||||||| ||| || ||||| |||||||||    
T  35930723 atcaaaattgattttgaatgtgtaatgaccaaaatatcattttaattg 35930676  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 35425319 - 35425263
Alignment:
Q  1 atcaaaattgattttgaatgtgtaacgactaatatatctttttaattgaaaccaaat 57  Q
    ||||||||||||||||||||||||| ||||||  |||| |||| ||| |||| ||||    
T  35425319 atcaaaattgattttgaatgtgtaatgactaaattatccttttgattaaaactaaat 35425263  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 12468222 - 12468151
Alignment:
Q  1 atcaaaattgattttgaatgtgtaacgactaatatatctttttaattgaaaccaaattatctaatactccaa 72  Q
    |||||||||||||||||||||  || ||| ||  |||| |||||||| ||||||||||||| ||||||||||    
T  12468222 atcaaaattgattttgaatgtacaatgaccaaattatccttttaattaaaaccaaattatcaaatactccaa 12468151  T

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Target: scaffold0369 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 8434 - 8363
Alignment:
Q  1 atcaaaattgattttgaatgtgtaacgactaatatatctttttaattgaaaccaaattatctaatactccaa 72  Q
    |||||||||||||||||||||  || ||| ||  |||| |||||||| ||| ||||||||| ||||||||||    
T  8434 atcaaaattgattttgaatgtacaatgaccaaattatccttttaattaaaatcaaattatcaaatactccaa 8363  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 12632186 - 12632233
Alignment:
Q  1 atcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 48  Q
    ||||||||||||||||||||||||| ||| || ||||| |||||||||    
T  12632186 atcaaaattgattttgaatgtgtaatgaccaaaatatccttttaattg 12632233  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 16548124 - 16548077
Alignment:
Q  1 atcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 48  Q
    ||||||||||||||||||||||||| ||||||  |||| |||||||||    
T  16548124 atcaaaattgattttgaatgtgtaatgactaaactatccttttaattg 16548077  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 33899121 - 33899168
Alignment:
Q  1 atcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 48  Q
    ||||||||||||||||||||||||| ||| || ||||| |||||||||    
T  33899121 atcaaaattgattttgaatgtgtaatgaccaaaatatccttttaattg 33899168  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 14072473 - 14072422
Alignment:
Q  1 atcaaaattgattttgaatgtgtaacgactaatatatctttttaattgaaac 52  Q
    ||||||||||||||||||||||||| ||||||  |||| |||||||| ||||    
T  14072473 atcaaaattgattttgaatgtgtaatgactaaattatccttttaattaaaac 14072422  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 16566275 - 16566228
Alignment:
Q  1 atcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 48  Q
    ||||||||||||||||||||||||| ||||||  |||| |||||||||    
T  16566275 atcaaaattgattttgaatgtgtaatgactaaactatccttttaattg 16566228  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 39636755 - 39636709
Alignment:
Q  1 atcaaaattgattttgaatgtgtaacgactaatatatctttttaatt 47  Q
    ||||||||||||||| ||||||||||||| || ||||| ||||||||    
T  39636755 atcaaaattgattttaaatgtgtaacgaccaaaatatccttttaatt 39636709  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 5916355 - 5916402
Alignment:
Q  1 atcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 48  Q
    ||||||||||||||||||||||||| ||||||  |||| |||||||||    
T  5916355 atcaaaattgattttgaatgtgtaatgactaaactatccttttaattg 5916402  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 36312271 - 36312224
Alignment:
Q  1 atcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 48  Q
    ||||||||||||||||||||||||| ||||||  |||| |||||||||    
T  36312271 atcaaaattgattttgaatgtgtaatgactaaactatccttttaattg 36312224  T

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