View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3825_high_49 (Length: 226)
Name: NF3825_high_49
Description: NF3825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3825_high_49 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 25349373 - 25349424
Alignment:
| Q |
175 |
taagaattttatatttgcaaattagtggataacccacttacttattttcaat |
226 |
Q |
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| T |
25349373 |
taagaatcttatatttgcaaattagtggataacccacttacttattttcaat |
25349424 |
T |
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Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 25355067 - 25355118
Alignment:
| Q |
175 |
taagaattttatatttgcaaattagtggataacccacttacttattttcaat |
226 |
Q |
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| T |
25355067 |
taagaatcttatatttgcaaattagtggataacccacttacttattttcaat |
25355118 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 28444696 - 28444729
Alignment:
| Q |
8 |
aaataaaccaaagtctaattaaaattctggtaaa |
41 |
Q |
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| T |
28444696 |
aaataaaccaaagtctaattaaaattttggtaaa |
28444729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 25212793 - 25212745
Alignment:
| Q |
7 |
aaaataaaccaaagtctaattaaaattctggtaaatgctattttcggatt |
56 |
Q |
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| T |
25212793 |
aaaataaaccaaagtataactaaaattct-gtaaaagctattttcggatt |
25212745 |
T |
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