View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3825_high_6 (Length: 448)

Name: NF3825_high_6
Description: NF3825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3825_high_6
NF3825_high_6
[»] chr6 (1 HSPs)
chr6 (11-433)||(444849-445267)
[»] chr4 (2 HSPs)
chr4 (156-358)||(56477806-56478022)
chr4 (31-125)||(56478098-56478188)
[»] chr1 (4 HSPs)
chr1 (156-358)||(23261925-23262141)
chr1 (31-125)||(23261759-23261849)
chr1 (215-355)||(12603503-12603638)
chr1 (28-90)||(12603819-12603877)
[»] scaffold0238 (2 HSPs)
scaffold0238 (215-355)||(13302-13439)
scaffold0238 (28-90)||(13063-13121)
[»] chr2 (2 HSPs)
chr2 (215-355)||(10453466-10453603)
chr2 (28-121)||(10453227-10453313)


Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 11 - 433
Target Start/End: Complemental strand, 445267 - 444849
Alignment:
Q  11 cataggtatgtaatttgttctaagtaaatcattttcccacatatcttcttaattcagctccacgcttctcatttgcttcttcatgtcaacttcttgattg 110  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  445267 cataggtatgtaatttgttctaagtaaatca-------acatatcttcttaattcagctccacgcttctcatttgcttcttcatgtcaacttcttgattg 445175  T
Q  111 ttctcctctattttannnnnnncatgatgcttatgggttt------acgtctatttatcatttatttttgcactgttttcaacttactttgcaaaccaat 204  Q
    |||||||||||||||       || |||||||||||||||      | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  445174 ttctcctctattttatttttt-caggatgcttatgggttttgcattatgtctatttatcatttatttttgcactgttttcaacttactttgcaaaccaat 445076  T
Q  205 ttgtagtttgaaggcttcctgtagaggttacatatttcagtttaattgtttttgcctccggtttgagattcccatactattttctttgttcactttcaat 304  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||  |||||||||||||||||||||||||    
T  445075 ttgtagtctgaaggcttcctgtagaggttacatatttcagtttaatcgtttttgcctccagtttgagattccc--actattttctttgttcactttcaat 444978  T
Q  305 ctnnnnnnntactttattttaattttgctaaactccattttaattgttagtgttggttatcaaccattgcttgttggttgtgaaaaaatatttcttatgt 404  Q
    ||       | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  444977 ctaaaaaaatcctttattttaattttgctaaactccattttaattgttagtgttggttatcaaccattgcttgccggttgtgaaaaaatatttcttatgt 444878  T
Q  405 aaaaccatgcagattagtccctttattgt 433  Q
    |||||||||||||||||||||||||||||    
T  444877 aaaaccatgcagattagtccctttattgt 444849  T

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Target: chr4 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 156 - 358
Target Start/End: Complemental strand, 56478022 - 56477806
Alignment:
Q  156 tatttatcatttatttttgcactgttttcaacttactttgcaaaccaatttgtagt----------------ttgaaggcttcctgtagaggttacatat 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||    
T  56478022 tatttatcatttatttttgcactgttttcaacttactttgcaaaccaatttgtagtctgaaccttttgaaatttgaaggcttcctgtagaggttacatat 56477923  T
Q  240 ttcagtttaattgtttttgcctccggtttgagattcccatactattttctttgttcactttcaatctnnnnnnntactttattttaattttgctaaactc 339  Q
    |||||||| ||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||       | ||||||||||||||||||||||||    
T  56477922 ttcagttttattgtttttgcctccagtttgagattccc--actattttctttgttcactttcaatctaaaaaaatcctttattttaattttgctaaactc 56477825  T
Q  340 cattttaattgttagtgtt 358  Q
    |||||||||||||||||||    
T  56477824 cattttaattgttagtgtt 56477806  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 56478188 - 56478098
Alignment:
Q  31 taagtaaatcattttcccacatatcttcttaattcagctccacgcttctcatttgcttcttcatgtcaacttcttgattgttctcctctatttta 125  Q
    ||||||||| ||||||||||||||||||||    ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  56478188 taagtaaattattttcccacatatcttctt----cagctccacgcttctcatttgcttcttcaggtcaacttcttgattgatctcctctatttta 56478098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 156 - 358
Target Start/End: Original strand, 23261925 - 23262141
Alignment:
Q  156 tatttatcatttatttttgcactgttttcaacttactttgcaaaccaatttgtagt----------------ttgaaggcttcctgtagaggttacatat 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||    
T  23261925 tatttatcatttatttttgcactgttttcaacttactttgcaaaccaatttgtagtctgaaccttttgaaatttgaaggcttcctgtagaggttacatat 23262024  T
Q  240 ttcagtttaattgtttttgcctccggtttgagattcccatactattttctttgttcactttcaatctnnnnnnntactttattttaattttgctaaactc 339  Q
    |||||||| ||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||       | ||||||||||||||||||||||||    
T  23262025 ttcagttttattgtttttgcctccagtttgagattccc--actattttctttgttcactttcaatctaaaaaaatcctttattttaattttgctaaactc 23262122  T
Q  340 cattttaattgttagtgtt 358  Q
    |||||||||||||||||||    
T  23262123 cattttaattgttagtgtt 23262141  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 23261759 - 23261849
Alignment:
Q  31 taagtaaatcattttcccacatatcttcttaattcagctccacgcttctcatttgcttcttcatgtcaacttcttgattgttctcctctatttta 125  Q
    ||||||||| ||||||||||||||||||||    ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  23261759 taagtaaataattttcccacatatcttctt----cagctccacgcttctcatttgcttcttcaggtcaacttcttgattgatctcctctatttta 23261849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 215 - 355
Target Start/End: Complemental strand, 12603638 - 12603503
Alignment:
Q  215 aaggcttcctgtagaggttacatatttcagtttaattgtttttgcctccggtttgagattcccatactattttctttgttcactttcaatctnnnnnnnt 314  Q
    |||||||||||||||||||||| ||||||||||| || ||||||||||| |||||| ||||||  |||||||||||||||||||||||||||       |    
T  12603638 aaggcttcctgtagaggttacaaatttcagtttatttttttttgcctccagtttgaaattccc--actattttctttgttcactttcaatctgtcaaaat 12603541  T
Q  315 actttattttaattttgctaaactccattttaattgttagt 355  Q
     |||||||||| |||||||||   |||||||||||| ||||    
T  12603540 cctttattttacttttgctaa---ccattttaattggtagt 12603503  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 12603877 - 12603819
Alignment:
Q  28 ttctaagtaaatcattttcccacatatcttcttaattcagctccacgcttctcatttgcttct 90  Q
    |||| ||||||||||||||||||||||||||    |||| |||||||| ||||||||||||||    
T  12603877 ttcttagtaaatcattttcccacatatcttc----ttcaactccacgcctctcatttgcttct 12603819  T

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Target: scaffold0238 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 215 - 355
Target Start/End: Original strand, 13302 - 13439
Alignment:
Q  215 aaggcttcctgtagaggttacatatttcagtttaattgtttttgcctccggtttgagattcccatactattttctttgttcactttcaatctnnnnnnnt 314  Q
    |||||||||||||||||||||| |||||||||| ||| ||||||||||| |||||||||||||  |||||||||||||||||||||||||||       |    
T  13302 aaggcttcctgtagaggttacaaatttcagttt-attttttttgcctccagtttgagattccc--actattttctttgttcactttcaatctgtaaaaat 13398  T
Q  315 actttattttaattttgctaaactccattttaattgttagt 355  Q
     |||||||||| |||||||||||||||||||||||| ||||    
T  13399 cctttattttacttttgctaaactccattttaattggtagt 13439  T

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Target: scaffold0238; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 13063 - 13121
Alignment:
Q  28 ttctaagtaaatcattttcccacatatcttcttaattcagctccacgcttctcatttgcttct 90  Q
    |||| ||||||||||||||||||||||||||    |||| |||||||| ||||||||||||||    
T  13063 ttcttagtaaatcattttcccacatatcttc----ttcaactccacgcctctcatttgcttct 13121  T

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Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 215 - 355
Target Start/End: Original strand, 10453466 - 10453603
Alignment:
Q  215 aaggcttcctgtagaggttacatatttcagtttaattgtttttgcctccggtttgagattcccatactattttctttgttcactttcaatctnnnnnnnt 314  Q
    |||||||||||||||||||| | ||||||||||| || ||||||||||| ||||||||||||||  ||||||||||||||||||||||||||       |    
T  10453466 aaggcttcctgtagaggttaaaaatttcagtttattt-tttttgcctccagtttgagattccca--ctattttctttgttcactttcaatctgtaaaaat 10453562  T
Q  315 actttattttaattttgctaaactccattttaattgttagt 355  Q
     |||||||||| |||||||||||||||||||||||| ||||    
T  10453563 cctttattttacttttgctaaactccattttaattggtagt 10453603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 10453227 - 10453313
Alignment:
Q  28 ttctaagtaaatcattttcccacatatcttcttaattcagctccacgcttctcatttgcttcttcatgtcaacttcttga-ttgttctcctctat 121  Q
    |||| ||||||||||||||||||||||||||    ||||||||||||| |||||||||||||    ||||| |||||||| ||||||||||||||    
T  10453227 ttcttagtaaatcattttcccacatatcttc----ttcagctccacgcctctcatttgcttc----tgtcatcttcttgatttgttctcctctat 10453313  T

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