View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3825_high_8 (Length: 437)
Name: NF3825_high_8
Description: NF3825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3825_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 330
Target Start/End: Original strand, 39185286 - 39185598
Alignment:
| Q |
16 |
cagttacttccaaatgacacatgcaaaccgttatggcaaaagcaaatgccgccgccggcgtaccgccgaagtaaacgcggcggaaaaatcgccaccggta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
39185286 |
cagttacttccaaatgacacatgcaaaccgttatggcaaaagcaaatgtcgccgccggcgtaccgccgaagtaaacgcggcggaaaaatcgccaccgtta |
39185385 |
T |
|
| Q |
116 |
agcgcaaaaatcgaaaatcctaacgatcatgactaaatgcaaacgaaaacggttatagcggaacagaaccgcctccgccgaagtcaaagcggtggaagac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39185386 |
agcgcaaaaatcgaaaatcctaacgatcatgactaaatgcaaacgaaaacggttatagcggaacagaaccgcctccgccgaagtcaaagcggtggaagac |
39185485 |
T |
|
| Q |
216 |
gaacagaagatcgtcaccggaaaatgcagagaccgccggnnnnnnnncagaaatatcgtaaaaccctaacgtttctctaaagaaacgatcgtgactaaat |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
39185486 |
gaacagaagatcgtcaccggaaaatgcagagacagccgg--aaaaaacagaaatatcgtaaaaccctaacatttctctaaagaaacgatcgcgactaaat |
39185583 |
T |
|
| Q |
316 |
gcaaacgaaaatagt |
330 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
39185584 |
gcaaacgaaaatagt |
39185598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University