View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3825_low_1 (Length: 683)
Name: NF3825_low_1
Description: NF3825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3825_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 566; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 9 - 578
Target Start/End: Complemental strand, 2187215 - 2186646
Alignment:
| Q |
9 |
agcagagaagttgacattgaaaatggatgttaggcctgatgaagctttggtgggtgctttgtttggagcttgtaaaactcatgggagggttgatgttgct |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2187215 |
agcagagaagttgacattgaaaatggatgttaggcctgatgaagctttggtgggtgctttgtttggagcttgtaaaactcatgggagggttgatgttgct |
2187116 |
T |
|
| Q |
109 |
gagagagttgcagagaggttttatgggacagagctgagtgttgttgcatcctcaatttgaattcaatatacatgatgtggaggaggatctagcagaagga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2187115 |
gagagagttgcagagaggttttatgggacagagctgagtgttgttgcatcctcaatttgaattcaatatacatgatgtggaggaggatctagcagaagga |
2187016 |
T |
|
| Q |
209 |
tatcatgaaatggatgctcgagagcttcgcaaacttagtcgggtaagttttgtttgtttcaaaatattagagattatgtttgtaacttctggactacgta |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2187015 |
tatcatgaaatggatgctcgagagcttcgcaaacttagtcgggtaagttttgtttgtttcaaaatattagagattatgtttgtaacttctggactacgta |
2186916 |
T |
|
| Q |
309 |
ccaatgtaatctctactataatgtggttcgaattaattttgcctgcaaatacactcgtaaggtccatgtggaattagttggtaccactaccatctgttag |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2186915 |
ccaatgtaatctctactataatgtggttcgaattaattttgcctgcaaatacactcgtaaggtccatgtggaattagttggtaccactaccatctgttag |
2186816 |
T |
|
| Q |
409 |
actaggcttgtctactgcgcgggagattgattttactccagctattctctttagatttatgagaggatttcccaagtttttatgacgttatccacatacc |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2186815 |
actaggcttgtctactgcgcgggagattgattttactccagctattctctttagatttatgagaggatttcccaagtttttatgacgttatccacatacc |
2186716 |
T |
|
| Q |
509 |
aggccaatgtgaagttttaagaagtcttatgcataaatatgtctccatgatcatactttactttacttac |
578 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2186715 |
aggccaatgtgaagttttaataagtcttatgcataaatatgtctccatgatcatactttactttacttac |
2186646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 184 - 578
Target Start/End: Complemental strand, 2193314 - 2192920
Alignment:
| Q |
184 |
tgtggaggaggatctagcagaaggatatcatgaaatggatgctcgagagcttcgcaaacttagtcgggtaagttttgtttgtttcaaaatattagagatt |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2193314 |
tgtggaggaggatctagcagaaggatatcatgaaatggatgctcgagagcttcgcaaacttagtcgggtaagttttgtttgtttcaaaatattagagatt |
2193215 |
T |
|
| Q |
284 |
atgtttgtaacttctggactacgtaccaatgtaatctctactataatgtggttcgaattaattttgcctgcaaatacactcgtaaggtccatgtggaatt |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2193214 |
atgtttgtaacttctggactacgtaccaatgtaatctctactataatgtggttcgaattaattttgcctgcaaatacactcgtaaggtccatgtggaatt |
2193115 |
T |
|
| Q |
384 |
agttggtaccactaccatctgttagactaggcttgtctactgcgcgggagattgattttactccagctattctctttagatttatgagaggatttcccaa |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2193114 |
agttggtaccactaccatctgttagactaggcttgtctactgcgcgggagattgattttactccagctattctctttagatttatgagaggatttcccaa |
2193015 |
T |
|
| Q |
484 |
gtttttatgacgttatccacataccaggccaatgtgaagttttaagaagtcttatgcataaatatgtctccatgatcatactttactttacttac |
578 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2193014 |
gtttttatgacgttatccacataccaggccaatgtgaagttttaataagtcttatgcataaatatgtctccatgatcatactttactttacttac |
2192920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 174; Significance: 3e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 9 - 186
Target Start/End: Original strand, 36616424 - 36616601
Alignment:
| Q |
9 |
agcagagaagttgacattgaaaatggatgttaggcctgatgaagctttggtgggtgctttgtttggagcttgtaaaactcatgggagggttgatgttgct |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36616424 |
agcagagaagttgacattgaaaatggatgtcaggcctgatgaagctttggtgggtgctttgtttggagcttgtaaaactcatgggagggttgatgttgct |
36616523 |
T |
|
| Q |
109 |
gagagagttgcagagaggttttatgggacagagctgagtgttgttgcatcctcaatttgaattcaatatacatgatgt |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36616524 |
gagagagttgcagagaggttttatgggacagagctgagtgttgttgcatcctcaatttgaattcaatatacatgatgt |
36616601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 9 - 186
Target Start/End: Original strand, 36650178 - 36650355
Alignment:
| Q |
9 |
agcagagaagttgacattgaaaatggatgttaggcctgatgaagctttggtgggtgctttgtttggagcttgtaaaactcatgggagggttgatgttgct |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36650178 |
agcagagaagttgacattgaaaatggatgttaggcctgatgaagctttggtgggtgctttgtttggagcttgtaaaactcatgggagggttgatgttgct |
36650277 |
T |
|
| Q |
109 |
gagagagttgcagagaggttttatgggacagagctgagtgttgttgcatcctcaatttgaattcaatatacatgatgt |
186 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36650278 |
gagagagttgcagagaagttttatgggacagagctgagtgttgttgcatcctcaatttgaattcaatatacatgatgt |
36650355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University