View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3825_low_16 (Length: 374)
Name: NF3825_low_16
Description: NF3825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3825_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 40012228 - 40012576
Alignment:
| Q |
18 |
agttgatgatgattattgaaatgcttggtgttaaacgttgttggaagcaagctctatctgtggttcaatgggtgtacaattccaaggatcacagaaagtt |
117 |
Q |
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| T |
40012228 |
agttgatgatgattattgaaatgcttggtgttaaacgttgttggaagcaagctctatctgtggttcaatgggtgtacaattccaaggatcacagaaagtt |
40012327 |
T |
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| Q |
118 |
tcaaagcaggtgatttgtttctgaaacataaattacgtttagggtattttagatttcagactgaggatttcggatgggagggttttggagagctatgttt |
217 |
Q |
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| T |
40012328 |
tcaaagcaggtgatttgtttctgaaacataaattatgtttagggtattttagatttcagactgaggatttcggatgggagggttttggagagctatgttt |
40012427 |
T |
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| Q |
218 |
atattttggtatatatttaagattt--nnnnnnnnntatatatgaaggattaacatgatcagataatatttcaaatcataaattagtctacatgaatcat |
315 |
Q |
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| T |
40012428 |
atattttggtatatatttaagatttaaaaaaatatatatatatgaaggattaacatgatcagataatatttcaaatcataaattagtctacatgaatcat |
40012527 |
T |
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| Q |
316 |
aattatgttgtagtgtcttcttggagggaggtaaatgtaaatccctttg |
364 |
Q |
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| T |
40012528 |
aattatgttgtagtgtcttcttggagggaggtaaatgtaaatccctttg |
40012576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 335 - 363
Target Start/End: Complemental strand, 2791358 - 2791330
Alignment:
| Q |
335 |
cttggagggaggtaaatgtaaatcccttt |
363 |
Q |
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| T |
2791358 |
cttggagggaggtaaatgtaaatcccttt |
2791330 |
T |
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