View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3825_low_2 (Length: 539)

Name: NF3825_low_2
Description: NF3825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3825_low_2
NF3825_low_2
[»] chr8 (17 HSPs)
chr8 (11-523)||(3159777-3160289)
chr8 (11-397)||(2889561-2889950)
chr8 (11-307)||(2875298-2875595)
chr8 (11-246)||(3145185-3145420)
chr8 (11-198)||(2796137-2796327)
chr8 (389-523)||(2874762-2874896)
chr8 (435-520)||(2889441-2889526)
chr8 (308-398)||(2874920-2875010)
chr8 (308-398)||(2797225-2797314)
chr8 (119-197)||(18393581-18393659)
chr8 (207-304)||(2796835-2796932)
chr8 (82-197)||(27401840-27401955)
chr8 (482-523)||(2797334-2797375)
chr8 (122-197)||(1226113-1226187)
chr8 (438-483)||(4416772-4416817)
chr8 (384-438)||(15131733-15131787)
chr8 (383-441)||(18393290-18393348)
[»] chr2 (8 HSPs)
chr2 (74-197)||(17651268-17651391)
chr2 (273-391)||(41849222-41849335)
chr2 (122-197)||(44649997-44650072)
chr2 (83-197)||(4748110-4748224)
chr2 (12-74)||(41848957-41849019)
chr2 (384-438)||(32200609-32200663)
chr2 (388-440)||(4747814-4747866)
chr2 (14-74)||(38783772-38783832)
[»] chr1 (8 HSPs)
chr1 (8-197)||(16426366-16426564)
chr1 (117-197)||(3387707-3387787)
chr1 (74-178)||(50127210-50127313)
chr1 (82-197)||(3954967-3955082)
chr1 (117-197)||(48632613-48632693)
chr1 (389-440)||(48632320-48632371)
chr1 (402-438)||(32741216-32741252)
chr1 (273-301)||(48632494-48632522)
[»] scaffold0012 (1 HSPs)
scaffold0012 (16-262)||(209133-209393)
[»] scaffold1723 (1 HSPs)
scaffold1723 (15-196)||(369-557)
[»] chr6 (7 HSPs)
chr6 (119-197)||(2602143-2602221)
chr6 (119-197)||(33234886-33234962)
chr6 (389-437)||(19294696-19294744)
chr6 (15-74)||(2602031-2602090)
chr6 (391-441)||(17540400-17540450)
chr6 (389-434)||(2602442-2602487)
chr6 (387-435)||(34013863-34013911)
[»] chr7 (10 HSPs)
chr7 (134-197)||(9729906-9729969)
chr7 (74-178)||(27993911-27994015)
chr7 (74-262)||(11820487-11820681)
chr7 (119-197)||(11809308-11809386)
chr7 (129-172)||(25445505-25445549)
chr7 (117-178)||(32716562-32716623)
chr7 (389-438)||(45215789-45215838)
chr7 (133-197)||(37338793-37338857)
chr7 (119-197)||(48598363-48598441)
chr7 (123-197)||(6439797-6439871)
[»] chr4 (2 HSPs)
chr4 (11-66)||(32593730-32593785)
chr4 (135-192)||(32593896-32593953)
[»] chr5 (1 HSPs)
chr5 (12-72)||(41815776-41815836)
[»] scaffold0325 (1 HSPs)
scaffold0325 (134-197)||(12947-13010)


Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 11 - 523
Target Start/End: Original strand, 3159777 - 3160289
Alignment:
Q  11 cataggacaccgacactgctacctgtatactaatttatctatgaaagatctaaattgagaatcacatatgtatctaacttgagtaatttatttcattnnn 110  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||       
T  3159777 cataggacaccgacactgctacctgtatactaatttatttatgaaagatctaaattgagaatcaaatatgtatctaacttgagcaatttatttcattaaa 3159876  T
Q  111 nnnnggtctataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaactttatagcccttcgttg 210  Q
        ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3159877 aaaaggtctataacaagttacaatagtatttggcctttatttatccatctaatatcgaaaaatttaaacacgttgtaatcaactttatagcccttcgttg 3159976  T
Q  211 atcaagattttccgcacgtctttaactcttgaatatactatgtgtgtaagcatagnnnnnnntcagacatttgtttgagttgtctgacatgcctcatgga 310  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  3159977 atcaacattttccgcacgtctttaactcttgaatatactatgtgtgtaagcatagaaaaaaatcagacatttgtttgagttgtctgacatgcctcatgga 3160076  T
Q  311 gtataagttttatataggtgttgggcacctgtccaaggagtgtcaaaataaagaagaaaaacatttatttagtacacttgtcggacactgcgacacgcgt 410  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  3160077 gtataagttttatataggtgttgggcaccagtccaaggagtgtcaaaataaaggagaaaaacatttatttagtacacttgtcggacactgcgacatgcgt 3160176  T
Q  411 aatcctggaggtgtctgtgcttcataggttagtgacttgtgcaccaatctcatgtgagtacggagataaaagagaggggatgggtagtggagaaggcatt 510  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3160177 aatcctagaggtgtccgtgcttcataggttagtgacttgtgcaccaatctcatgtgagtacggagataaaagagaggggatgggtagtggagaaggcatt 3160276  T
Q  511 ctgaagtattatt 523  Q
    |||||||||||||    
T  3160277 ctgaagtattatt 3160289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 11 - 397
Target Start/End: Complemental strand, 2889950 - 2889561
Alignment:
Q  11 cataggacaccgacactgctacctgtatactaatttatctatgaaagatctaaattgagaatcacatatgtatctaacttgagtaatttatttcattnnn 110  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||       
T  2889950 cataggacaccgacactgctacttgtatactaatttatttatgaaagatctaaattgagaatcacgtatgtatcttacttgagcaatttatttcattaaa 2889851  T
Q  111 nnnnggtctataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaactttatagcccttcgttg 210  Q
        ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  2889850 aaaaggtctataacaagatacaatagtatttggcctttatttatccatctactatcgaaaaatttaaaaacgttgtattcaactttatagcccttcgttg 2889751  T
Q  211 atcaagattttccgcacgtctttaactcttgaatatactatgtgtgtaagcatag---nnnnnnntcagacatttgtttgagttgtctgacatgcctcat 307  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||          |||||||||||||||||||||||||||||||||||    
T  2889750 atcaacattttccgcacgtctttaactcttgaatatactatgtgtggaagcatagaaaaaaaaaatcagacatttgtttgagttgtctgacatgcctcat 2889651  T
Q  308 ggagtataagttttatataggtgttgggcacctgtccaaggagtgtcaaaataaagaagaaaaacatttatttagtacacttgtcggaca 397  Q
    ||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||    
T  2889650 ggagtataagttttatagaggtgttgggtaccagtccaaggagtgtcaaaataaaggagaaaaatatttatttagtacacttgtctgaca 2889561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 307
Target Start/End: Complemental strand, 2875595 - 2875298
Alignment:
Q  11 cataggacaccgacactgctacctgtatactaatttatctatgaaagatctaaattgagaatcacatatgtatctaacttgagtaatttatttcattnnn 110  Q
    ||||||||||||||||||| |||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||       
T  2875595 cataggacaccgacactgccacctgtatactaatctatttatgaaagatcttaattgagaatcacatatgtatctaacttgagcaatttagttcattaaa 2875496  T
Q  111 nnnnggtctataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaactttatagcccttcgttg 210  Q
        ||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2875495 aaaaggtttataacaagatacaatagtatttggcctttatttatccatctactattgaaaaatttaaacacgttgtaatcaactttatagcccttcgttg 2875396  T
Q  211 atcaagattttccgcacgtctttaactcttgaatatactatgtgtgtaagcatag-nnnnnnntcagacatttgtttgagttgtctgacatgcctcat 307  Q
    ||||| ||||||| |||||||| ||||||||||||||||||||||| ||||||||        ||||||||||||||||||||||| |||||||||||    
T  2875395 atcaacattttcctcacgtcttcaactcttgaatatactatgtgtggaagcatagaaaaaaaatcagacatttgtttgagttgtctaacatgcctcat 2875298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 3145185 - 3145420
Alignment:
Q  11 cataggacaccgacactgctacctgtatactaatttatctatgaaagatctaaattgagaatcacatatgtatctaacttgagtaatttatttcattnnn 110  Q
    ||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||  |||||||| ||||||| |||||||||||||       
T  3145185 cataggacaccgacactactacttgtatactaatttatttatgaaagatctaaattgagaatcacgcatgtatcttacttgagcaatttatttcattaaa 3145284  T
Q  111 nnnnggtctataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaactttatagcccttcgttg 210  Q
        ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  3145285 aaaaggtctataacaagatacaatagtatttggcctttatttatccatctactatcgaaaaatttaaaaacgttgtattcaactttatagcccttcgttg 3145384  T
Q  211 atcaagattttccgcacgtctttaactcttgaatat 246  Q
    ||||| ||||||||||||||||||||||||||||||    
T  3145385 atcaacattttccgcacgtctttaactcttgaatat 3145420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 11 - 198
Target Start/End: Original strand, 2796137 - 2796327
Alignment:
Q  11 cataggacaccgacactgctacctgtatactaatttatctatgaaagatctaaattgagaatcacatatgtatctaacttgagtaatttatttcattnnn 110  Q
    ||||||||||| |||||||||| | ||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||       
T  2796137 cataggacacccacactgctacttctatactaatttatttatgaaagatcttaattgagaatcacatatgcatctaacttgagcaatttatttcattaaa 2796236  T
Q  111 nnnn---ggtctataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaactttat 198  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2796237 aaaaaaaggtctataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaatacgttgtaatcaactttat 2796327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 389 - 523
Target Start/End: Complemental strand, 2874896 - 2874762
Alignment:
Q  389 tgtcggacactgcgacacgcgtaatcctggaggtgtctgtgcttcataggttagtgacttgtgcaccaatctcatgtgagtacggagataaaagagaggg 488  Q
    ||||||| || |||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2874896 tgtcggagaccgcgacatgcgtaatcctagaggtgtccgtgcttcataggttagtgacttgtgcaccaatctcatgtgagtacggagataaaagagaggg 2874797  T
Q  489 gatgggtagtggagaaggcattctgaagtattatt 523  Q
    ||||| |||||||||||||||||||| ||||||||    
T  2874796 gatggatagtggagaaggcattctgatgtattatt 2874762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 435 - 520
Target Start/End: Complemental strand, 2889526 - 2889441
Alignment:
Q  435 taggttagtgacttgtgcaccaatctcatgtgagtacggagataaaagagaggggatgggtagtggagaaggcattctgaagtatt 520  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2889526 taggttagtgacttgtgcaccaatctcatgtgagtagggagataaaagagaggggatgggtagtggagaaggcattctgaagtatt 2889441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 308 - 398
Target Start/End: Complemental strand, 2875010 - 2874920
Alignment:
Q  308 ggagtataagttttatataggtgttgggcacctgtccaaggagtgtcaaaataaagaagaaaaacatttatttagtacacttgtcggacac 398  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  2875010 ggagtataagttttatataggtgttggacaccagtccaaggagtgtcaaaataaagaagaaaaccatttatttagtacacttgtctgacac 2874920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 308 - 398
Target Start/End: Original strand, 2797225 - 2797314
Alignment:
Q  308 ggagtataagttttatataggtgttgggcacctgtccaaggagtgtcaaaataaagaagaaaaacatttatttagtacacttgtcggacac 398  Q
    ||||||||||||||| |||||| |||| |||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||    
T  2797225 ggagtataagtttta-ataggttttggacaccagtccaaggagtgtcaaaataaaggagaaaaccatttatttagtacacttgtctgacac 2797314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 119 - 197
Target Start/End: Complemental strand, 18393659 - 18393581
Alignment:
Q  119 tataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaacttta 197  Q
    ||||||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  18393659 tataacaagataaaatagtatttgacctttatttatccatctactatcaaaaaatttaaaaacgttgtaatcaacttta 18393581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 207 - 304
Target Start/End: Original strand, 2796835 - 2796932
Alignment:
Q  207 gttgatcaagattttccgcacgtctttaactcttgaatatactatgtgtgtaagcatagnnnnnnntcagacatttgtttgagttgtctgacatgcct 304  Q
    ||||||||| ||||||| |||||||| ||||||||||||||||||||||| ||||||||       ||| ||||||||||||||||||||||||||||    
T  2796835 gttgatcaacattttcctcacgtcttcaactcttgaatatactatgtgtggaagcatagaaaaaaatcatacatttgtttgagttgtctgacatgcct 2796932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 82 - 197
Target Start/End: Original strand, 27401840 - 27401955
Alignment:
Q  82 atctaacttgagtaatttatttcattnnnnnnnggtctataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacac 181  Q
    |||||||||||| |||||||||||||       | | ||||||||| |||||||| |||||||||||||||||||||||||||| |||| |   ||| ||    
T  27401840 atctaacttgagcaatttatttcattaaaaaaagttatataacaagatacaatagaatttggcctttatttatccatctactattgaaagaaaaaaaaac 27401939  T
Q  182 gttgtaatcaacttta 197  Q
    ||||||||||||||||    
T  27401940 gttgtaatcaacttta 27401955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 482 - 523
Target Start/End: Original strand, 2797334 - 2797375
Alignment:
Q  482 gagaggggatgggtagtggagaaggcattctgaagtattatt 523  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  2797334 gagaggggatgggtagtggagaaggcattctgatgtattatt 2797375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 122 - 197
Target Start/End: Original strand, 1226113 - 1226187
Alignment:
Q  122 aacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaacttta 197  Q
    |||||| ||| | ||||||||  |||||||||| ||||||||||| ||||||||||| | ||||||||||||||||    
T  1226113 aacaagataccagagtatttgatctttatttattcatctactatc-aaaaatttaaaaatgttgtaatcaacttta 1226187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 438 - 483
Target Start/End: Original strand, 4416772 - 4416817
Alignment:
Q  438 gttagtgacttgtgcaccaatctcatgtgagtacggagataaaaga 483  Q
    |||||||||||||||||||||||||| |||||||||  ||||||||    
T  4416772 gttagtgacttgtgcaccaatctcatatgagtacggttataaaaga 4416817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 438
Target Start/End: Complemental strand, 15131787 - 15131733
Alignment:
Q  384 acacttgtcggacactgcgacacgcgtaatcctggaggtgtctgtgcttcatagg 438  Q
    |||| |||||||||| ||||||||| || |||| |||||||| ||||||||||||    
T  15131787 acacgtgtcggacaccgcgacacgcctagtcctagaggtgtccgtgcttcatagg 15131733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 441
Target Start/End: Complemental strand, 18393348 - 18393290
Alignment:
Q  383 tacacttgtcggacactgcgacacgcgtaatcctggaggtgtctgtgcttcataggtta 441  Q
    ||||| |||| |||||| ||| |||| ||||||| ||||||| ||||||||||||||||    
T  18393348 tacacatgtcagacactccgaaacgcctaatcctagaggtgtttgtgcttcataggtta 18393290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 74 - 197
Target Start/End: Original strand, 17651268 - 17651391
Alignment:
Q  74 acatatgtatctaacttgagtaatttatttcattnnnnnnnggtctataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaat 173  Q
    ||||||| |||||||||||| |||||||||||||       | ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||     
T  17651268 acatatgcatctaacttgagcaatttatttcattacaagaagttctataacaagttacaataatatttggcctttatttatccatctactattgaaaaac 17651367  T
Q  174 ttaaacacgttgtaatcaacttta 197  Q
    ||||| ||||||||||||||||||    
T  17651368 ttaaatacgttgtaatcaacttta 17651391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 273 - 391
Target Start/End: Original strand, 41849222 - 41849335
Alignment:
Q  273 tcagacatttgtttgagttgtctgacatgcctcatggagtataagttttatataggtgttgggcacctgtccaaggagtgtcaaaataaagaagaaaaac 372  Q
    |||||||||||||||||||||| |||| |||||||     |||||| |||||||||||| || |||| |||||||||||||| ||||||| |||||||      
T  41849222 tcagacatttgtttgagttgtccgacacgcctcat-----ataagtgttatataggtgtcggacaccagtccaaggagtgtcgaaataaaaaagaaaata 41849316  T
Q  373 atttatttagtacacttgt 391  Q
    | |||||||| ||||||||    
T  41849317 acttatttaggacacttgt 41849335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 197
Target Start/End: Complemental strand, 44650072 - 44649997
Alignment:
Q  122 aacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaacttta 197  Q
    |||||| ||| |||| ||||| ||||||||||| ||||||||||| ||||| ||||| | ||||||||||||||||    
T  44650072 aacaagataccatagaatttgacctttatttattcatctactatcaaaaaagttaaaaatgttgtaatcaacttta 44649997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 83 - 197
Target Start/End: Complemental strand, 4748224 - 4748110
Alignment:
Q  83 tctaacttgagtaatttatttcattnnnnnnnggtctataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacacg 182  Q
    ||||||||||| |||||||||||||       | |||| |||||||||| |||||||||| ||||||||||| ||||| |||| ||| ||  |||| | |    
T  4748224 tctaacttgagcaatttatttcattggaaaaagttctaaaacaagttacgatagtatttgacctttatttattcatcttctattgaacaaactaaaaatg 4748125  T
Q  183 ttgtaatcaacttta 197  Q
     ||||||||||||||    
T  4748124 ctgtaatcaacttta 4748110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 41848957 - 41849019
Alignment:
Q  12 ataggacaccgacactgctacctgtatactaatttatctatgaaagatctaaattgagaatca 74  Q
    ||||||||||||||| |||| || |||| |||||||| ||| ||| |||||||||||||||||    
T  41848957 ataggacaccgacaccgctatctatatattaatttatttataaaatatctaaattgagaatca 41849019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 438
Target Start/End: Complemental strand, 32200663 - 32200609
Alignment:
Q  384 acacttgtcggacactgcgacacgcgtaatcctggaggtgtctgtgcttcatagg 438  Q
    |||| |||||||||| ||||||||| || |||| |||||||| ||||||||||||    
T  32200663 acacgtgtcggacaccgcgacacgcctagtcctagaggtgtccgtgcttcatagg 32200609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 440
Target Start/End: Complemental strand, 4747866 - 4747814
Alignment:
Q  388 ttgtcggacactgcgacacgcgtaatcctggaggtgtctgtgcttcataggtt 440  Q
    |||||||||||  |||||||| || |||| |||||||| ||||||||||||||    
T  4747866 ttgtcggacaccacgacacgcctagtcctagaggtgtccgtgcttcataggtt 4747814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 38783832 - 38783772
Alignment:
Q  14 aggacaccgacactgctacctgtatactaatttatctatgaaagatctaaattgagaatca 74  Q
    ||||||||||| |||||| || |||| |||||||| ||| ||| |||| ||||||||||||    
T  38783832 aggacaccgacgctgctatctatatattaatttatttataaaatatctgaattgagaatca 38783772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 8 - 197
Target Start/End: Original strand, 16426366 - 16426564
Alignment:
Q  8 aagcataggacaccgacactgctacctgtatactaatttatctatgaaagatctaaattgagaatca---------catatgtatctaacttgagtaatt 98  Q
    ||||||||||||| ||||| ||||||| |||| |||||||| ||| |||||| |||||| |||||||         |||||| |||||||||||| ||||    
T  16426366 aagcataggacactgacaccgctacctatatattaatttatttataaaagatataaattaagaatcaaaatacatacatatgcatctaacttgagcaatt 16426465  T
Q  99 tatttcattnnnnnnnggtctataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaacttta 197  Q
    || ||||||       | |||||||||| |||||||||||||||||||||||||||| ||||| ||| ||||||||||||  |  ||||||||||||||    
T  16426466 tacttcattaaaacaagttctataacaaattacaatagtatttggcctttatttatctatctattattgaaaaatttaaatgcactgtaatcaacttta 16426564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 3387707 - 3387787
Alignment:
Q  117 tctataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaacttta 197  Q
    ||||||||||| || ||||||||||| ||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  3387707 tctataacaagataaaatagtatttgacctttatttattcatctaccatcgaaaaatttaaaaacgttgtaatcaacttta 3387787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 74 - 178
Target Start/End: Complemental strand, 50127313 - 50127210
Alignment:
Q  74 acatatgtatctaacttgagtaatttatttcattnnnnnnnggtctataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaat 173  Q
    ||||||| |||||||||||  |||||||||||||       | ||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||    
T  50127313 acatatgcatctaacttgaacaatttatttcattaaataaagttctataacaagatacaatagtatttggcctttattt-ttcatctactatcgaaaaat 50127215  T
Q  174 ttaaa 178  Q
    |||||    
T  50127214 ttaaa 50127210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 82 - 197
Target Start/End: Original strand, 3954967 - 3955082
Alignment:
Q  82 atctaacttgagtaatttatttcattnnnnnnnggtctataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacac 181  Q
    |||||||||||| |||||||||||||       | |||| || ||| ||| || ||||||| |||||||||||||||||||||||||||||  |||| ||    
T  3954967 atctaacttgagcaatttatttcattaaaaaaagttctaaaataagatacgatcgtatttgacctttatttatccatctactatcgaaaaagctaaaaac 3955066  T
Q  182 gttgtaatcaacttta 197  Q
    ||||||||||||||||    
T  3955067 gttgtaatcaacttta 3955082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 117 - 197
Target Start/End: Complemental strand, 48632693 - 48632613
Alignment:
Q  117 tctataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaacttta 197  Q
    |||| |||||| ||| |||||||||| ||||||||||| | ||||||||| |||||  |||| ||||||||||||||||||    
T  48632693 tctaaaacaagataccatagtatttgacctttatttattcttctactatcaaaaaagctaaaaacgttgtaatcaacttta 48632613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 440
Target Start/End: Complemental strand, 48632371 - 48632320
Alignment:
Q  389 tgtcggacactgcgacacgcgtaatcctggaggtgtctgtgcttcataggtt 440  Q
    |||||||||| ||||||||| || |||| |||||||| ||||||||||||||    
T  48632371 tgtcggacaccgcgacacgcctagtcctagaggtgtccgtgcttcataggtt 48632320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 438
Target Start/End: Original strand, 32741216 - 32741252
Alignment:
Q  402 gacacgcgtaatcctggaggtgtctgtgcttcatagg 438  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  32741216 gacacgcctaatcctggaggtgtccgtgcttcatagg 32741252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 273 - 301
Target Start/End: Complemental strand, 48632522 - 48632494
Alignment:
Q  273 tcagacatttgtttgagttgtctgacatg 301  Q
    |||||||||||||||||||||||||||||    
T  48632522 tcagacatttgtttgagttgtctgacatg 48632494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 262
Target Start/End: Original strand, 209133 - 209393
Alignment:
Q  16 gacaccgacactgctacctgtatactaatttatctatgaaagatctaaattgagaatca---------catatgtatctaacttgagtaatttatttcat 106  Q
    ||||| ||||||||||  | |||| |||||||| ||| ||| |||||||||||||||||         |||||| ||||||||  || ||||||||||||    
T  209133 gacacagacactgctatttatatattaatttatttataaaatatctaaattgagaatcaaaatacatacatatgcatctaact--agcaatttatttcat 209230  T
Q  107 tnnnnnnnggtctataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaacttt-------ata 199  Q
    |       | ||||||||||  ||||| | |||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||       |||    
T  209231 taaaaaaagttctataacaaaatacaacaatatttggcctttatttatccatctacaatcgaaaaatttaaaaacgttgtaataaactttaatgtcgata 209330  T
Q  200 gcccttcgttgatcaagattttccgcacgtctttaactcttgaatatactatgtgtgtaagca 262  Q
     ||| ||||||||||| ||||  | ||  |||||||||||||||| ||| ||||||| |||||    
T  209331 acccctcgttgatcaacatttctcacaaatctttaactcttgaatctaccatgtgtgaaagca 209393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1723 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 557 - 369
Alignment:
Q  15 ggacaccgacactgctacctgtatactaatttatctatgaaagatctaaattgagaatcaca--------tatgtatctaacttgagtaatttatttcat 106  Q
    |||||||||||| |||| || |||| |||||||| ||| |||||||| |||| ||||||| |        |||| |||||||||||| || |||||||||    
T  557 ggacaccgacaccgctatctatatattaatttatttataaaagatcttaattaagaatcaaaatacataatatgcatctaacttgagcaaattatttcat 458  T
Q  107 tnnnnnnnggtctataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaacttt 196  Q
    |         ||||||||||| |||||||||||||| ||||||||||||||||| |||||| |||||| ||| |||||| ||||||||||    
T  457 taaaaaaaattctataacaagatacaatagtatttgacctttatttatccatctgctatcg-aaaattgaaatacgttggaatcaacttt 369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 6e-20; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 2602143 - 2602221
Alignment:
Q  119 tataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaacttta 197  Q
    ||||||||| |||||||||||||  ||||||||||||||| |||||||||||||||||||   ||||||||||||||||    
T  2602143 tataacaagatacaatagtatttaccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaacttta 2602221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 119 - 197
Target Start/End: Complemental strand, 33234962 - 33234886
Alignment:
Q  119 tataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaacttta 197  Q
    ||||||||| |||||||||||||| |||| ||||||||||||||||||| ||||||| || | ||||||||||||||||    
T  33234962 tataacaagatacaatagtatttgacctt-atttatccatctactatcg-aaaatttcaaaatgttgtaatcaacttta 33234886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 437
Target Start/End: Original strand, 19294696 - 19294744
Alignment:
Q  389 tgtcggacactgcgacacgcgtaatcctggaggtgtctgtgcttcatag 437  Q
    |||||||||| ||||||||| ||||||| |||||||| |||||||||||    
T  19294696 tgtcggacaccgcgacacgcctaatcctagaggtgtcggtgcttcatag 19294744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 2602031 - 2602090
Alignment:
Q  15 ggacaccgacactgctacctgtatactaatttatctatgaaagatctaaattgagaatca 74  Q
    ||||||||||||  |||||| |||| |||||||| ||| ||||||||||||| |||||||    
T  2602031 ggacaccgacacctctacctatatattaatttatttataaaagatctaaattaagaatca 2602090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 441
Target Start/End: Original strand, 17540400 - 17540450
Alignment:
Q  391 tcggacactgcgacacgcgtaatcctggaggtgtctgtgcttcataggtta 441  Q
    |||||||||||||||||  ||||||| ||||||| ||||||||||| ||||    
T  17540400 tcggacactgcgacacgtctaatcctagaggtgtatgtgcttcatatgtta 17540450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 2602442 - 2602487
Alignment:
Q  389 tgtcggacactgcgacacgcgtaatcctggaggtgtctgtgcttca 434  Q
    |||||||||||||||||||| |||||||  ||||||||||| ||||    
T  2602442 tgtcggacactgcgacacgcttaatcctaaaggtgtctgtgtttca 2602487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 435
Target Start/End: Original strand, 34013863 - 34013911
Alignment:
Q  387 cttgtcggacactgcgacacgcgtaatcctggaggtgtctgtgcttcat 435  Q
    |||||||||||| ||||||||| || |||| |||||||| |||||||||    
T  34013863 cttgtcggacaccgcgacacgcctagtccttgaggtgtccgtgcttcat 34013911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 134 - 197
Target Start/End: Complemental strand, 9729969 - 9729906
Alignment:
Q  134 tagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaacttta 197  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||  |||||||||||||||||    
T  9729969 tagtatttggactttatttatccacctactatcgaaaaatttaaatgcgttgtaatcaacttta 9729906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 74 - 178
Target Start/End: Original strand, 27993911 - 27994015
Alignment:
Q  74 acatatgtatctaacttgagtaatttatttcattnnnnnnnggtctataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaat 173  Q
    ||||||| || ||||||||| |||||||||||||       | ||||||||||| |||||||| | |||  |||||||||||||||||| ||||||||||    
T  27993911 acatatgcatttaacttgagcaatttatttcattaaataaagttctataacaagatacaatagcaattgatctttatttatccatctaccatcgaaaaat 27994010  T
Q  174 ttaaa 178  Q
    |||||    
T  27994011 ttaaa 27994015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 262
Target Start/End: Complemental strand, 11820681 - 11820487
Alignment:
Q  74 acatatgtatctaacttgagtaatttatttcattnnnnnnnggtctataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaat 173  Q
    ||||||| |||||||||||| |||||||||||||       | ||||| ||||  |||||||| |||||  ||||||||||  |||||||||  |||| |    
T  11820681 acatatgcatctaacttgagcaatttatttcattcaaaaa-gttctatgacaacatacaatagcatttgagctttatttatttatctactattaaaaatt 11820583  T
Q  174 ttaaacacgttgtaatcaacttta-------tagcccttcgttgatcaagattttccgcacgtctttaactcttgaatatactatgtgtgtaagca 262  Q
    ||||| | |||||||||| |||||       || ||||||||||||||| ||||  | ||| |||||||||||||||| |||| |||||| |||||    
T  11820582 ttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacacatctttaactcttgaatctactgtgtgtggaagca 11820487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 119 - 197
Target Start/End: Complemental strand, 11809386 - 11809308
Alignment:
Q  119 tataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaacttta 197  Q
    ||||||||| |||||||||||||||||||||||  | |||||||  || ||||||||||| | ||||||||||| ||||    
T  11809386 tataacaagatacaatagtatttggcctttattacttcatctaccgtcaaaaaatttaaaaaggttgtaatcaaattta 11809308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 25445505 - 25445549
Alignment:
Q  129 tacaatagtatttggccttt-atttatccatctactatcgaaaaa 172  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  25445505 tacaatagtatttggccttttatttatccatctactatcgaaaaa 25445549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 32716623 - 32716562
Alignment:
Q  117 tctataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaa 178  Q
    |||| |||||| ||||||||||||||  |||||||||| |||| |||||||||||| |||||    
T  32716623 tctaaaacaagatacaatagtatttgatctttatttattcatccactatcgaaaaagttaaa 32716562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 389 - 438
Target Start/End: Complemental strand, 45215838 - 45215789
Alignment:
Q  389 tgtcggacactgcgacacgcgtaatcctggaggtgtctgtgcttcatagg 438  Q
    |||||||||| ||||||||| || ||||||||||||| ||||||||||||    
T  45215838 tgtcggacaccgcgacacgcctagtcctggaggtgtccgtgcttcatagg 45215789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 37338857 - 37338793
Alignment:
Q  133 atagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaacttta 197  Q
    |||||||||| ||||||||||| ||||||||||| ||||| ||||| | ||| | ||||||||||    
T  37338857 atagtatttgacctttatttattcatctactatcaaaaaagttaaaaatgttattatcaacttta 37338793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 48598363 - 48598441
Alignment:
Q  119 tataacaagttacaatagtatttggcctttatttatccatcta-ctatcgaaaaatttaaacacgttgtaatcaacttta 197  Q
    ||||||| | |||||||||||||| |||||||||||||| |||  |||| ||||||| ||| ||||||||| ||||||||    
T  48598363 tataacacgatacaatagtatttgacctttatttatcca-ctatatatcaaaaaattaaaaaacgttgtaaccaacttta 48598441  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 123 - 197
Target Start/End: Original strand, 6439797 - 6439871
Alignment:
Q  123 acaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaacttta 197  Q
    ||||| ||| |||||||||| | | ||||||| || ||||||||||||||  |||| | ||||||||||||||||    
T  6439797 acaagatacgatagtatttgacatctatttattcaactactatcgaaaaagataaaaatgttgtaatcaacttta 6439871  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 32593730 - 32593785
Alignment:
Q  11 cataggacaccgacactgctacctgtatactaatttatctatgaaagatctaaatt 66  Q
    |||||||||| ||||| ||||||||||||||||||||| ||| || ||||||||||    
T  32593730 cataggacactgacaccgctacctgtatactaatttatttataaatgatctaaatt 32593785  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 32593896 - 32593953
Alignment:
Q  135 agtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaa 192  Q
    ||||||| ||||||||||||||||||||| || |||||||||||   |||||||||||    
T  32593896 agtatttagcctttatttatccatctactctcaaaaaatttaaatgtgttgtaatcaa 32593953  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 41815836 - 41815776
Alignment:
Q  12 ataggacaccgacactgctacctgtatactaatttatctatgaaagatctaaattgagaat 72  Q
    ||||||||||||||| ||||| | |||| |||||||| ||| ||||||| |||||||||||    
T  41815836 ataggacaccgacaccgctacatatatattaatttatttataaaagatccaaattgagaat 41815776  T

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Target: scaffold0325 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 197
Target Start/End: Original strand, 12947 - 13010
Alignment:
Q  134 tagtatttggcctttatttatccatctactatcgaaaaatttaaacacgttgtaatcaacttta 197  Q
    ||||||||| | ||||||||| ||||||||||| |||||  |||| || |||||||||||||||    
T  12947 tagtatttgacatttatttattcatctactatcaaaaaagctaaaaacattgtaatcaacttta 13010  T

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