View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3825_low_24 (Length: 298)
Name: NF3825_low_24
Description: NF3825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3825_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 36512331 - 36512616
Alignment:
| Q |
1 |
cttatagatttgaatttgagcctcaagcagcctatatgcctcattcttatactcaaaattaccacttttgacgtgataaggaaagtcggaatcgtcatac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36512331 |
cttatagatttgaatttgagcctcaagcagcctatatgcctcattcttatactcaaaattaccacttttgacgtgataaggaaagtcggaatcgtcatac |
36512430 |
T |
|
| Q |
101 |
ttagagaacttagagaagtacttcacaaaatcttcttcaacggctttctgttccggtttcgattccacgagatctccatctgatttctgttccaatcccg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36512431 |
ttagagaacttagagaagtacttcacaaaatcttcttcaacggctttctgttccggtttcgattccacgagatctccatctgatttctgttccaatcccg |
36512530 |
T |
|
| Q |
201 |
accctgattcctgtttcaacagtttctgttccattctctgttcaggttccaaattcagcccatttctccccttatttatgggcgat |
286 |
Q |
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| T |
36512531 |
atcctgattcctgtttcaacagtttctgttccattctctgttcaggttccaaattcagcccatttctccccttatttatgggcgat |
36512616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 36808474 - 36808369
Alignment:
| Q |
1 |
cttatagatttgaatttgagcctcaagcagcctatatgcctcattcttatactcaaaattaccacttttgacgtgataaggaaagtcggaatcgtcatac |
100 |
Q |
| |
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|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||| ||| ||| ||||||||||||||||||| | |
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| T |
36808474 |
cttatatatttgaatttgagcctt--gcttcctatatgcctcattcttatactcaaaattaccacgtttgccgtaatatggaaagtcggaatcgtcatgc |
36808377 |
T |
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| Q |
101 |
ttagagaa |
108 |
Q |
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|||||||| |
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| T |
36808376 |
ttagagaa |
36808369 |
T |
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