View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3825_low_3 (Length: 535)
Name: NF3825_low_3
Description: NF3825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3825_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-156; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 14 - 329
Target Start/End: Original strand, 11586101 - 11586416
Alignment:
| Q |
14 |
caaatgtatccccccttttgttcttgtacttctgtagttagcttgttgatttacatctcagggttgatgcctttctcgtatctcggtctttcgattagtg |
113 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11586101 |
caaatgtagcctcccttttgttcttgtacttctgtagttagcttgttgatttacatctcagggttgatgcctttctcgtatctcggtttttcgattagtg |
11586200 |
T |
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| Q |
114 |
caaacctaaggaattgtttcactttgaaacctatgttaaacgttctacacaataggcttaggttttggcgtaataggtatgttagccttatagcggaaga |
213 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||| |
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| T |
11586201 |
caaacctaaggaattctttcactttgaaacctatgttaaacgttctacacaataggcttaggttttggcgtaataggcatgtcagccttatagcgaaaga |
11586300 |
T |
|
| Q |
214 |
aaattttatttcgattcatttatcgaattcacagaaatttttaaaaagaaaaattgtctacatcatctgaaaatgtcacgacatacaaaaacacaagtta |
313 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
11586301 |
aaaatttatttcgattcatttatcgaattcacagaaatttttaaaaagaaaaattgtctacatcatctgaaaatgtcacgacataaaaaaacacaagtta |
11586400 |
T |
|
| Q |
314 |
cggatttcttggtcac |
329 |
Q |
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|||||||||||||||| |
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| T |
11586401 |
cggatttcttggtcac |
11586416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 14 - 329
Target Start/End: Original strand, 11598690 - 11599002
Alignment:
| Q |
14 |
caaatgtatccccccttttgttcttgtacttctgtagttagcttgttgatttacatctcagggttgatgcctttctcgtatctcggtctttcgattagtg |
113 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11598690 |
caaacgtagccccccttttgttcttgtacttctgtagttagcttgttgatttacatctgagggttgatgcctttctcgtatctcggtctttcgattagtg |
11598789 |
T |
|
| Q |
114 |
caaacctaaggaattgtttcactttgaaacctatgttaaacgttctacacaataggcttaggttttggcgtaataggtatgttagccttatagcggaaga |
213 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
11598790 |
caaacctaagtaattgtttcactttgaaacctatgttaaacgttctacacaataggcttaggttttggcgtaataggtatgtcagccttatagcgaaaga |
11598889 |
T |
|
| Q |
214 |
aaattttatttcgattcatttatcgaattcacagaaatttttaaaaagaaaaattgtctacatcatctgaaaatgtcacgacatacaaaaacacaagtta |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11598890 |
aaattttatttcgattcatttatcgaattcacagaaatttttaaaaagaaaaattgtctacatcatctgaa---gtcacgacatacaaaaacacaagtta |
11598986 |
T |
|
| Q |
314 |
cggatttcttggtcac |
329 |
Q |
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|||||||||||||||| |
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| T |
11598987 |
cggatttcttggtcac |
11599002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 14 - 316
Target Start/End: Original strand, 11609234 - 11609538
Alignment:
| Q |
14 |
caaatgtatccccccttttgttcttgt--acttctgtagtt-agcttgttgatttacatctcagggttgatgcctttctcgtatctcggtctttcgatta |
110 |
Q |
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|||||||| | |||||||| ||||| | |||| ||||||| ||||| ||||||| | |||| ||| ||||||||||| ||||||||| |||||||||| |
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| T |
11609234 |
caaatgtagctccccttttcttcttttctacttttgtagtttagcttcttgatttggaactcaaggtcgatgcctttcttgtatctcgggctttcgatta |
11609333 |
T |
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| Q |
111 |
gtgcaaacctaaggaattgtttcactttgaaacctatgttaaacgttctacacaataggcttaggttttggcgtaataggtatgttagccttatagcgga |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || |||||| | |||||||||||| |||||||||||| |||||||||||||| |
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| T |
11609334 |
gtgcaaacctaaggaattgtttcactttgaaacctatgttaaacgttgtagacaataagattaggttttggcataataggtatgtcagccttatagcgga |
11609433 |
T |
|
| Q |
211 |
agaaaattttatttcgattcatttatcgaattcacagaaatttttaaaaagaaaaattgtctacatcatctgaaaatgtcacgacatacaaaaacacaag |
310 |
Q |
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||||||||||||| |||||||||||||||| | || ||||||| |||||||||||||||||||| ||| |||||||||| |||||||| |||||||||| |
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| T |
11609434 |
agaaaattttattccgattcatttatcgaactgacccaaattttcaaaaagaaaaattgtctacaccatttgaaaatgtctcgacatac-aaaacacaag |
11609532 |
T |
|
| Q |
311 |
ttacgg |
316 |
Q |
| |
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|||||| |
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| T |
11609533 |
ttacgg |
11609538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 397 - 525
Target Start/End: Original strand, 11586484 - 11586613
Alignment:
| Q |
397 |
catcttttgatgtgtaaattgtttaggtcttttggtattaannnnnnnn-ctttctatgtggagcagcctctagtttcaccttccaaagatggtgtgaag |
495 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11586484 |
catcttttgatgtgtaaattgtttaggtcttttggtattcatttttttttctttctatgtggagcagcctctagtttcacctcccaaagatggtgtgaag |
11586583 |
T |
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| Q |
496 |
attattcaagaatgtttcatagaccctttg |
525 |
Q |
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| T |
11586584 |
attattcaagaatgtttcatagaccctttg |
11586613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 397 - 525
Target Start/End: Original strand, 11599070 - 11599199
Alignment:
| Q |
397 |
catcttttgatgtgtaaattgtttaggtcttttggtattaannnnnnnn-ctttctatgtggagcagcctctagtttcaccttccaaagatggtgtgaag |
495 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11599070 |
catcttttgatgtgtaaattgtttaggtcttttggtattcatttttttttctttctatgtggagcagcctctagtttcacctcccaaagatggtgtgaag |
11599169 |
T |
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| Q |
496 |
attattcaagaatgtttcatagaccctttg |
525 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
11599170 |
attattcaagaatgtttcatagaccctttg |
11599199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 397 - 525
Target Start/End: Original strand, 11609569 - 11609698
Alignment:
| Q |
397 |
catcttttgatgtgtaaattgtttaggtcttttggtattaannnnnnnn-ctttctatgtggagcagcctctagtttcaccttccaaagatggtgtgaag |
495 |
Q |
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||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11609569 |
catcttttgctgtgtaaattgtttaggtcttttggtattcatttttttttctttctatgtggagcagcctctagtttcacctcccaaagatggtgtgaag |
11609668 |
T |
|
| Q |
496 |
attattcaagaatgtttcatagaccctttg |
525 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
11609669 |
attattcaagaatgtttcatagaccctttg |
11609698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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