View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3825_low_30 (Length: 272)
Name: NF3825_low_30
Description: NF3825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3825_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 4 - 258
Target Start/End: Complemental strand, 13397838 - 13397584
Alignment:
| Q |
4 |
tgcttcgattcaaagaatgtataccaattttgaatcgaatcaaaacttgagatatgagattctgaaaagagatgacaactaaacttgtttctacaacgat |
103 |
Q |
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| T |
13397838 |
tgcttcgattcaaagaatgtataccaattttgaatagaatcaaaacttgagatatgagattctgaaaagagatgacaaccaaacttgttgctacaatgat |
13397739 |
T |
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| Q |
104 |
ctacgaatgtcttacaatggtaactaagctacaactaaacaaaaacataatctaattaattcaagaaatgaacatcatcaaaactatttaattgaaccaa |
203 |
Q |
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| T |
13397738 |
ctacgaatgtcttacaatggtaaccaagttacaactaaacaaaaacataatctaattaattcaacaagtgaacatcatcagaactatttaattgaaccaa |
13397639 |
T |
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| Q |
204 |
ggagcaaactacatataacgaagcatatgaccacatgtgcaagtaagtggaagct |
258 |
Q |
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| T |
13397638 |
ggagcaaactacatataacgaaacatatgaccacatgtgcaagtaagtggaagct |
13397584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 217
Target Start/End: Complemental strand, 16117433 - 16117329
Alignment:
| Q |
114 |
cttacaatggtaactaagctacaactaaacaaaaacataatctaattaattcaagaaatgaacatcatcaaaac-tatttaattgaaccaaggagcaaac |
212 |
Q |
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| T |
16117433 |
cttacaatagtaactaagcgatagccaaacaaaaacattatcttatcaagtcaaggaataaatatcaacaaaacttatctaattgaaccaatgaacaaac |
16117334 |
T |
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| Q |
213 |
tacat |
217 |
Q |
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||||| |
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| T |
16117333 |
tacat |
16117329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 191
Target Start/End: Original strand, 15784200 - 15784274
Alignment:
| Q |
117 |
acaatggtaactaagctacaactaaacaaaaacataatctaattaattcaagaaatgaacatcatcaaaactatt |
191 |
Q |
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||||||||||||||| | ||| ||||||||||||| |||||| || ||||| | |||||||||||||||||| |
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| T |
15784200 |
acaatggtaactaagttgcaattaaacaaaaacattatctaaacaaatcaaggagaaaacatcatcaaaactatt |
15784274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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