View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3825_low_32 (Length: 266)

Name: NF3825_low_32
Description: NF3825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3825_low_32
NF3825_low_32
[»] chr1 (3 HSPs)
chr1 (13-252)||(47460550-47460789)
chr1 (13-250)||(47467216-47467453)
chr1 (140-248)||(47455576-47455684)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 47460550 - 47460789
Alignment:
Q  13 gttatcattcattttgttctgaatgtgttgtcaaacaagtggcaacaaaaatccaagacaacataacaaatgtgtcttgtcctggtttgaactgcaaagg 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47460550 gttaccattcattttgttctgaatgtgttgtcaaacaagtggcaacaaaaatccaagacaacataacaaatgtgtcttgtcctggtttgaactgcaaagg 47460649  T
Q  113 tgtgttggagcttgagtcatgcaggaaattgcttcctaaagaattgattgataagtggaatgatgcattatgtgaggcnnnnnnncttactgttcctaag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  47460650 tgtgttggagcttgagtcatgcaggaaattgcttcctaaagaattgattgataagtggaatgatgcattatgtgaggctttttttcttactgttcctaag 47460749  T
Q  213 ttctattgcccctttaaggattgttctgctatgttgcttg 252  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  47460750 ttctattgcccctttaaggattgttctgctatgttgcttg 47460789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 47467216 - 47467453
Alignment:
Q  13 gttatcattcattttgttctgaatgtgttgtcaaacaagtggcaacaaaaatccaagacaacataacaaatgtgtcttgtcctggtttgaactgcaaagg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  47467216 gttatcattcattttgttctgaatgtgttgtcaaacaagtggctacaaaaatccaagacaacataacaaatgtgtcttgtcctggtttgaactgcaaggg 47467315  T
Q  113 tgtgttggagcttgagtcatgcaggaaattgcttcctaaagaattgattgataagtggaatgatgcattatgtgaggcnnnnnnncttactgttcctaag 212  Q
    |||||| |||||||| || ||||||  ||||||||| ||||| |||||||||| ||||||||||||||| ||||||||       ||| |||||||||||    
T  47467316 tgtgttagagcttgaatcttgcaggtcattgcttccaaaagagttgattgataggtggaatgatgcattgtgtgaggctttttttcttgctgttcctaag 47467415  T
Q  213 ttctattgcccctttaaggattgttctgctatgttgct 250  Q
    |||||||| |||||||||||||| ||||||||| ||||    
T  47467416 ttctattgtccctttaaggattgctctgctatgatgct 47467453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 140 - 248
Target Start/End: Original strand, 47455576 - 47455684
Alignment:
Q  140 attgcttcctaaagaattgattgataagtggaatgatgcattatgtgaggcnnnnnnncttactgttcctaagttctattgcccctttaaggattgttct 239  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||| ||        ||||||||||||| ||||| || || |||||||||||||||    
T  47455576 attgcttcctaaagaattgtttgataagtggaatgatgcattgtgtgaagctctttttgttactgttcctaaattctactgtccatttaaggattgttct 47455675  T
Q  240 gctatgttg 248  Q
    |||||||||    
T  47455676 gctatgttg 47455684  T

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