View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3825_low_33 (Length: 265)
Name: NF3825_low_33
Description: NF3825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3825_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 5655465 - 5655739
Alignment:
| Q |
1 |
ttcctacccattgtgctttctcagactcaaatacaagtttcattcctgtaaccaaattttacaattagatatcataaagaaacagaaattgaaacaagat |
100 |
Q |
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| T |
5655465 |
ttcctacccattgtgctttctcagactcaaatacaagtttcattcctgtaaccaaattttacaattagatatcataaagaaacagaaattgaaacaagat |
5655564 |
T |
|
| Q |
101 |
ttgtaaaagtattaaaact---------------ttgtgcagcattttattagtgttacctattgactaacatattttgacctatagaaatgtaatgttt |
185 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5655565 |
ttgtaaaagtattaaaactatagtacttgtgaatttgtgcagcattttattagtgttacctattgactaacatattttgacctatagaaatgtaatgttt |
5655664 |
T |
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| Q |
186 |
tcaaatggtaaataaatgcaatttataattaccatcaagaaacacagaaccatttgagttgaaccctatgcttct |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5655665 |
tcaaatggtaaataaatgcaatttataattaccatcaagaaacacagaaccatttgagttgaaccctatgcttct |
5655739 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 47049012 - 47048974
Alignment:
| Q |
18 |
ttctcagactcaaatacaagtttcattcctgtaaccaaa |
56 |
Q |
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|||||||| || ||||||||||||||||||||||||||| |
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| T |
47049012 |
ttctcagattcgaatacaagtttcattcctgtaaccaaa |
47048974 |
T |
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