View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3825_low_40 (Length: 248)
Name: NF3825_low_40
Description: NF3825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3825_low_40 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 27309052 - 27308809
Alignment:
| Q |
16 |
gatgtaagggtccaattttgtatatatgctatgctatttaagggttctttctctctggcttttggaccaccttatttcattctcctaatttctgtacact |
115 |
Q |
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| T |
27309052 |
gatgtaagggtccaattttgtatatatgctatgctatttaagggttctttctctctggcttttggaccaccttatttcattctcctaatttctgtacatt |
27308953 |
T |
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| Q |
116 |
acgaccaatcacttcagcataggtttgtccaggttgtaggaaagcaaaaaatcatgagcttaaatgtgac---atgaaaatctaaaaaa--------gaa |
204 |
Q |
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| T |
27308952 |
acgaccaatcacttcagcataggtttgtccaggttgtaggaaagcaaaaaatcatgagcttaaatgtgacattatgaaaatctaaaaaaaaaaaagtaaa |
27308853 |
T |
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| Q |
205 |
ggatctgggtgatgcatattttaattaagactagtcataccaat |
248 |
Q |
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| T |
27308852 |
agattttggtgatgcatattttaattaagactagtaacaccaat |
27308809 |
T |
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