View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3825_low_45 (Length: 238)

Name: NF3825_low_45
Description: NF3825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3825_low_45
NF3825_low_45
[»] chr2 (7 HSPs)
chr2 (1-43)||(7576325-7576367)
chr2 (1-44)||(1902929-1902972)
chr2 (1-44)||(1904424-1904467)
chr2 (1-44)||(7577792-7577835)
chr2 (1-44)||(23834580-23834623)
chr2 (1-44)||(28462509-28462552)
chr2 (1-37)||(38875994-38876030)
[»] scaffold0210 (1 HSPs)
scaffold0210 (1-44)||(4706-4749)
[»] chr8 (4 HSPs)
chr8 (2-37)||(5703058-5703093)
chr8 (1-44)||(27163115-27163158)
chr8 (1-44)||(39810102-39810145)
chr8 (1-43)||(42348961-42349003)
[»] chr7 (2 HSPs)
chr7 (1-44)||(1831995-1832037)
chr7 (1-44)||(34158057-34158100)
[»] chr6 (3 HSPs)
chr6 (1-44)||(12321561-12321604)
chr6 (1-44)||(12322818-12322861)
chr6 (1-43)||(22058294-22058336)
[»] chr5 (4 HSPs)
chr5 (1-44)||(11956138-11956181)
chr5 (1-44)||(11957664-11957707)
chr5 (1-44)||(41064143-41064186)
chr5 (1-44)||(41065672-41065715)
[»] chr4 (3 HSPs)
chr4 (1-44)||(34739887-34739930)
chr4 (1-43)||(20963715-20963757)
chr4 (1-37)||(34741409-34741445)
[»] chr3 (4 HSPs)
chr3 (1-44)||(10616789-10616832)
chr3 (1-44)||(15086221-15086264)
chr3 (1-44)||(28206981-28207024)
chr3 (1-44)||(28208160-28208203)


Alignment Details
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 7576367 - 7576325
Alignment:
Q  1 caaaagtgccctatattacagggggataaagccctataaaccc 43  Q
    ||||||||||||||||||||||||||||||| ||||| |||||    
T  7576367 caaaagtgccctatattacagggggataaagacctattaaccc 7576325  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 1902972 - 1902929
Alignment:
Q  1 caaaagtgccctatattacagggggataaagccctataaaccct 44  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||||    
T  1902972 caaaagtgccctatattacaggggggtaaagacctattaaccct 1902929  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 1904424 - 1904467
Alignment:
Q  1 caaaagtgccctatattacagggggataaagccctataaaccct 44  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||||    
T  1904424 caaaagtgccctatattacaggggggtaaagacctattaaccct 1904467  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 7577792 - 7577835
Alignment:
Q  1 caaaagtgccctatattacagggggataaagccctataaaccct 44  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||||    
T  7577792 caaaagtgccctatattacaggggggtaaagacctattaaccct 7577835  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 23834623 - 23834580
Alignment:
Q  1 caaaagtgccctatattacagggggataaagccctataaaccct 44  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||||    
T  23834623 caaaagtgccctatattacaggggggtaaagacctattaaccct 23834580  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 28462509 - 28462552
Alignment:
Q  1 caaaagtgccctatattacagggggataaagccctataaaccct 44  Q
    |||||||| |||||||||||||||||||||| ||||| ||||||    
T  28462509 caaaagtgacctatattacagggggataaaggcctattaaccct 28462552  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 38876030 - 38875994
Alignment:
Q  1 caaaagtgccctatattacagggggataaagccctat 37  Q
    |||||||| |||||||||||||||| |||||||||||    
T  38876030 caaaagtgtcctatattacaggggggtaaagccctat 38875994  T

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Target: scaffold0210 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 4749 - 4706
Alignment:
Q  1 caaaagtgccctatattacagggggataaagccctataaaccct 44  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||||    
T  4749 caaaagtgccctatattacaggggggtaaagacctattaaccct 4706  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 5703093 - 5703058
Alignment:
Q  2 aaaagtgccctatattacagggggataaagccctat 37  Q
    |||||||||||||||||||||||| |||||||||||    
T  5703093 aaaagtgccctatattacaggggggtaaagccctat 5703058  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 27163158 - 27163115
Alignment:
Q  1 caaaagtgccctatattacagggggataaagccctataaaccct 44  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||||    
T  27163158 caaaagtgccctatattacaggggggtaaagacctattaaccct 27163115  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 39810102 - 39810145
Alignment:
Q  1 caaaagtgccctatattacagggggataaagccctataaaccct 44  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||||    
T  39810102 caaaagtgccctatattacaggggggtaaagacctattaaccct 39810145  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 42349003 - 42348961
Alignment:
Q  1 caaaagtgccctatattacagggggataaagccctataaaccc 43  Q
    ||||||||||||||||||||||||| ||||| ||||| |||||    
T  42349003 caaaagtgccctatattacaggggggtaaagacctattaaccc 42348961  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 1831995 - 1832037
Alignment:
Q  1 caaaagtgccctatattacagggggataaagccctataaaccct 44  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||    
T  1831995 caaaagtgccctatattacaggggg-taaagccctattaaccct 1832037  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 34158100 - 34158057
Alignment:
Q  1 caaaagtgccctatattacagggggataaagccctataaaccct 44  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||||    
T  34158100 caaaagtgccctatattacaggggggtaaagacctattaaccct 34158057  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 12321604 - 12321561
Alignment:
Q  1 caaaagtgccctatattacagggggataaagccctataaaccct 44  Q
    ||||||| ||||||||||||||||||||||| ||||| ||||||    
T  12321604 caaaagtaccctatattacagggggataaagacctattaaccct 12321561  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 12322818 - 12322861
Alignment:
Q  1 caaaagtgccctatattacagggggataaagccctataaaccct 44  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||||    
T  12322818 caaaagtgccctatattacaggggggtaaagacctattaaccct 12322861  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 22058294 - 22058336
Alignment:
Q  1 caaaagtgccctatattacagggggataaagccctataaaccc 43  Q
    ||||||||||||||||||||||||| ||||| ||||| |||||    
T  22058294 caaaagtgccctatattacaggggggtaaagacctattaaccc 22058336  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 11956181 - 11956138
Alignment:
Q  1 caaaagtgccctatattacagggggataaagccctataaaccct 44  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||||    
T  11956181 caaaagtgccctatattacaggggggtaaagacctattaaccct 11956138  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 11957664 - 11957707
Alignment:
Q  1 caaaagtgccctatattacagggggataaagccctataaaccct 44  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||||    
T  11957664 caaaagtgccctatattacaggggggtaaagacctattaaccct 11957707  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 41064186 - 41064143
Alignment:
Q  1 caaaagtgccctatattacagggggataaagccctataaaccct 44  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||||    
T  41064186 caaaagtgccctatattacaggggggtaaagacctattaaccct 41064143  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 41065672 - 41065715
Alignment:
Q  1 caaaagtgccctatattacagggggataaagccctataaaccct 44  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||||    
T  41065672 caaaagtgccctatattacaggggggtaaagacctattaaccct 41065715  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 34739930 - 34739887
Alignment:
Q  1 caaaagtgccctatattacagggggataaagccctataaaccct 44  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||||    
T  34739930 caaaagtgccctatattacaggggggtaaagacctattaaccct 34739887  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 20963715 - 20963757
Alignment:
Q  1 caaaagtgccctatattacagggggataaagccctataaaccc 43  Q
    ||||||||||||||||||||||||| ||||| ||||| |||||    
T  20963715 caaaagtgccctatattacaggggggtaaagacctattaaccc 20963757  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34741409 - 34741445
Alignment:
Q  1 caaaagtgccctatattacagggggataaagccctat 37  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  34741409 caaaagtgccctatattacaggggggtaaagacctat 34741445  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 10616789 - 10616832
Alignment:
Q  1 caaaagtgccctatattacagggggataaagccctataaaccct 44  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||||    
T  10616789 caaaagtgccctatattacaggggggtaaagacctattaaccct 10616832  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 15086264 - 15086221
Alignment:
Q  1 caaaagtgccctatattacagggggataaagccctataaaccct 44  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||||    
T  15086264 caaaagtgccctatattacaggggggtaaagacctattaaccct 15086221  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 28207024 - 28206981
Alignment:
Q  1 caaaagtgccctatattacagggggataaagccctataaaccct 44  Q
    |||||||||||||||||||||| || ||||||||||| ||||||    
T  28207024 caaaagtgccctatattacaggagggtaaagccctattaaccct 28206981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 28208160 - 28208203
Alignment:
Q  1 caaaagtgccctatattacagggggataaagccctataaaccct 44  Q
    ||||||||||||||||||||||||| |||||| |||| ||||||    
T  28208160 caaaagtgccctatattacaggggggtaaagctctattaaccct 28208203  T

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