View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3825_low_46 (Length: 237)
Name: NF3825_low_46
Description: NF3825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3825_low_46 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 33530467 - 33530231
Alignment:
| Q |
1 |
tgcggtatacaatgaaggactagagtatgatccattcaactcagttctgttatgtaacagagcagcttgtcgttctaagctcggccaatttgagaaagca |
100 |
Q |
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| T |
33530467 |
tgcggtatacaatgaaggactagagtatgatccattcaactcagttctgttatgtaacagagcagcttgtcgttctaagctcggccaatttgagaaagca |
33530368 |
T |
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| Q |
101 |
attgaagactgcaatgtagctcttacagttcagcctaattatagcaaggcaatgttgcggcgagctgattgcaatgctaaggtgctttaatttctaaatt |
200 |
Q |
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| T |
33530367 |
attgaagactgcaatgtagctcttacagttcagcctaattatagcaaggcaatgttgcggcgagctgattgcaatgctaaggtgctttaatttctaaatt |
33530268 |
T |
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| Q |
201 |
aatattaaattttactatatacttggtttccgatggt |
237 |
Q |
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| T |
33530267 |
aatattaaactttactatatacttggtttccgatggt |
33530231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 26208279 - 26208176
Alignment:
| Q |
5 |
gtatacaatgaaggactagagtatgatccattcaactcagttctgttatgtaacagagcagcttgtcgttctaagctcggccaatttgagaaagcaattg |
104 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||| |||||||||||||| || || | ||| |||||||||| |
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| T |
26208279 |
gtatacaatgaaggactagatcatgatccacacaactcagttctgttatgcaacagagcagcgtgtcgttctaagctagggcagtatgaaaaagcaattg |
26208180 |
T |
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| Q |
105 |
aaga |
108 |
Q |
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|||| |
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| T |
26208179 |
aaga |
26208176 |
T |
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