View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3825_low_5 (Length: 448)
Name: NF3825_low_5
Description: NF3825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3825_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 3 - 432
Target Start/End: Original strand, 4500276 - 4500705
Alignment:
| Q |
3 |
tggaggagcagagagtgatttggtttgatgtggaatgtaagcggttattggataagaatgtgattaggggtttgatgtagcggtggtgagaggtagttag |
102 |
Q |
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| T |
4500276 |
tggaagagcaaagagtgatttggtttgtcgtggaatgtaagcagttattagataaggatgtgattaggggtttgatgtagcggtggtgagcggtagttag |
4500375 |
T |
|
| Q |
103 |
aggagcatgggtgtgcatgcatagttagatcaagttgatagtgcatgtataaattgagtgacattcataagacatttacaagattttatttagtgttgaa |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4500376 |
aggagcatgggtgtgcatgcatagttagatcaagttgatagtgcatgtataaattgagtgacattcataagacatttacaagattttatttagtgttgaa |
4500475 |
T |
|
| Q |
203 |
tagtggaaaaactcttctaaaagagaagaaactaggcatatgtctcaagttgatagcgaactaatataagttgttgtgtg-nnnnnnnctcttgtttgct |
301 |
Q |
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|||||||||||||| |||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||| || |||||||||||| |
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| T |
4500476 |
cagtggaaaaactctactaaaagagaagaaactaggcacatgcctcaagttgatagtgaactaatataagttgttgtatgtttttttgctcttgtttgct |
4500575 |
T |
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| Q |
302 |
tctggttaacataagcttgcaaaataatctttgtcaaagaatttnnnnnnnnnnnnnnctatttatattaatttgctctcgtgattaacactgcttattt |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
4500576 |
tctggttaacataagcttgcaaaataatctttgtcaaagaattt-aaaaaaaaaaaaactatttatattaatttgctcttgtgattaactctgcttattt |
4500674 |
T |
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| Q |
402 |
gtatacatttgtgattgaaaaaccatgtcac |
432 |
Q |
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||||| ||||||||||| |||||||| |||| |
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| T |
4500675 |
gtatatatttgtgattggaaaaccatatcac |
4500705 |
T |
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